@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-06 )
VTCGQVSSSLAPCIAYLQKGGTPAPGCCNGVKSLVGAAQTTADKQAVCNCLKGAAGQVPGLNNQYAQSLPSLCGVNIPYKISTSTNCASIKF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




22 HHSearch 95.1759%-129 - C2 -2ALG 3.7 NLTP1_PRUPE
23 HHSearch 94.3759%-141 - C2 -1T12 - NLTP1_TOBAC -
25 HHSearch 93.2562%-134 - C2 -1SIY - NLTP1_VIGRR -
11 SP3 89.3257%-124 - C2 -1FK5 5.3 NLTP_MAIZE
24 HHSearch 85.1758%-115 - C2 -1AFH - NLTP_MAIZE -
26 HHSearch 83.5544%-129 - C2 -1BWO 3.8 NLTP1_WHEAT
36 HHSearch 59.7732%-125 - C2 -1SM7 - ? -
18 SP3 56.4516%-143 - C2 -1HSS - IAA1_WHEAT -
38 HHSearch 55.3220%-151 * C2 *1HSS - IAA1_WHEAT -
39 HHSearch 55.2521%-107 - C2 -2LVF - ? -
34 HHSearch 54.4119%-152 - C2 -1BEA - ITRF_MAIZE -
40 HHSearch 53.0620%-114 - C2 -1W2Q - CONG_ARAHY -
33 HHSearch 50.8129% -85 - C2 -1PSY - 2SS_RICCO -
3 Fugue 50.4523%-104 - C2 -1L6H - NLTPX_ORYSJ -
5 Fugue 50.3027% -69 - C2 -1PSY - 2SS_RICCO -
2 Fugue 48.0424% -80 - C2 -2RKN - DIRL1_ARATH -
27 HHSearch 47.9325%-101 - C2 -2RKN - DIRL1_ARATH -
15 SP3 47.0616%-126 - C2 -1QPO - NADC_MYCTU -
13 SP3 46.0918% -85 - C2 -1L6H - NLTPX_ORYSJ -
41 HHSearch 45.2723%-118 - C2 -1S6D - 2SS8_HELAN -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




43 96.57100%-139 - C- -M043 - -
42 94.10100%-139 - C- -M042 - -
47 93.89100%-144 - C- -M047 - -