@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-06 )
VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTTADRRAACDCIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAIN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]




OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




23 HHSearch 91.6947%-123 - C2 -2ALG 2.7 NLTP1_PRUPE
25 HHSearch 90.8551%-121 - C2 -1SIY - NLTP1_VIGRR -
11 SP3 90.7048%-117 - C2 -1FK5 4.6 NLTP_MAIZE
21 HHSearch 86.1849%-112 - C2 -1AFH - NLTP_MAIZE -
22 HHSearch 83.1342%-125 - C2 -1T12 - NLTP1_TOBAC -
26 HHSearch 82.4039%-117 - C2 -1BWO - NLTP1_WHEAT -
38 HHSearch 58.0720%-141 * C2 *1HSS - IAA1_WHEAT -
18 SP3 57.3415%-135 - C2 -1HSS - IAA1_WHEAT -
35 HHSearch 54.9417%-152 - C2 -1BEA - ITRF_MAIZE -
10 Fugue 53.9025% -91 - C2 -1S6D - 2SS8_HELAN -
40 HHSearch 53.4021%-113 - C2 -1S6D - 2SS8_HELAN -
36 HHSearch 53.3022%-139 - C2 -1SM7 - ? -
32 HHSearch 50.8923%-100 - C2 -1PSY - 2SS_RICCO -
2 Fugue 50.4529% -78 - C2 -2RKN - DIRL1_ARATH -
6 Fugue 49.1623% -81 - C2 -1PSY - 2SS_RICCO -
27 HHSearch 48.4530% -95 - C2 -2RKN - DIRL1_ARATH -
15 SP3 47.7414%-117 - C2 -1QPO - NADC_MYCTU -
39 HHSearch 47.6714% -98 - C2 -1W2Q - CONG_ARAHY -
13 SP3 47.4414%-117 - C2 -1QPO - NADC_MYCTU -
41 HHSearch 45.6915% -93 - C2 -2LVF - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]




OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




47 95.17100%-128 - C- -M047 - -
42 94.30100%-130 - C- -M042 - -
49 91.72100%-129 - C- -M049 - -
48 90.69100%-131 - C- -M048 - -