@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-07 )
AITCGQVSSALSPCIPYARGNGANPSAACCSGVRRIAGAVQSTADKKTACNCIKRAAGGLNAGKAADIPSKCSVSIPYAINPSVDCSTIR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]
11 SP3 92.0964%-118 - C4 -1FK5 6.4 NLTP_MAIZE
15 HHSearch 87.2864%-116 - C4 -1AFH - NLTP_MAIZE -
20 HHSearch 86.6243%-122 - C4 -1BWO - NLTP1_WHEAT -
16 HHSearch 83.9252%-119 - C4 -1T12 - NLTP1_TOBAC -
19 HHSearch 80.2641%-129 - C4 -1SIY - NLTP1_VIGRR -
18 HHSearch 79.6249%-128 - C4 -2ALG 3.3 NLTP1_PRUPE
28 HHSearch 58.5423%-118 - C4 -1BEA - ITRF_MAIZE -
29 HHSearch 57.2624%-102 - C4 -1SM7 - ? -
31 HHSearch 56.2032% -98 - C4 -1PSY - 2SS_RICCO -
3 Fugue 53.5830%-110 - C4 -1L6H - NLTPX_ORYSJ -
33 HHSearch 51.1013% -97 - C4 -1W2Q - CONG_ARAHY -
25 HHSearch 50.7620%-115 - C4 -1S6D - 2SS8_HELAN -
21 HHSearch 49.0922% -82 - C4 -2RKN - DIRL1_ARATH -
2 Fugue 44.3024% -69 - C4 -2RKN - DIRL1_ARATH -
27 HHSearch 41.2520% -60 - C4 -1B1U - IAAT_ELECO -
4 Fugue 40.8122% -52 - C4 -1PSY - 2SS_RICCO -
22 HHSearch 36.8032% -67 - C4 -1L6H - NLTPX_ORYSJ -
23 HHSearch 35.9026% -46 - C4 -1N89 - NLT2G_WHEAT -
10 Fugue 34.5916% -32 - C4 -1S6D - 2SS8_HELAN -
5 Fugue 31.3113% -54 - C4 -1W2Q - CONG_ARAHY -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]
34 96.78100%-136 - C- -M034 - -
41 96.24100%-123 - C- -M041 - -
36 95.36100%-136 - C- -M036 - -