@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-07 )
AIGCGTVVSYLNPCLPYVTNKGPLGSCCGGVKGLYGAAQTAQDRQSVCSCLKSLAGSYKDVDLNKAAGLPGQCGVNIPYKISPSTDCSKVN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
19 HHSearch 93.9066%-151 - C1 -1T12 - NLTP1_TOBAC -
23 HHSearch 85.1847%-140 - C1 -1SIY - NLTP1_VIGRR -
20 HHSearch 84.6751%-141 - C1 -2ALG 3.9 NLTP1_PRUPE
24 HHSearch 81.3247%-144 - C1 -1BWO 5.5 NLTP1_WHEAT
11 SP3 80.2948%-139 - C1 -1FK5 5.8 NLTP_MAIZE
21 HHSearch 79.0347%-136 - C1 -1AFH - NLTP_MAIZE -
31 HHSearch 56.3626%-166 - C1 -1BEA - ITRF_MAIZE -
5 Fugue 53.2125%-116 - C1 -1S6D - 2SS8_HELAN -
38 HHSearch 51.1219%-122 - C1 -1W2Q - CONG_ARAHY -
32 HHSearch 49.4727%-119 - C1 -1SM7 - ? -
35 HHSearch 48.5922%-127 - C1 -1S6D - 2SS8_HELAN -
37 HHSearch 48.0320%-107 - C1 -2LVF - ? -
25 HHSearch 45.7633%-107 - C1 -2RKN - DIRL1_ARATH -
29 HHSearch 44.9517%-132 - C1 -1B1U - IAAT_ELECO -
15 SP3 43.9818%-104 - C1 -1QPO - NADC_MYCTU -
33 HHSearch 43.1221%-114 - C1 -3OB4 - ? -
2 Fugue 42.6730% -87 - C1 -2RKN - DIRL1_ARATH -
6 Fugue 42.5523% -73 - C1 -1PSY - 2SS_RICCO -
7 Fugue 39.2120%-111 - C1 -1L6H - NLTPX_ORYSJ -
34 HHSearch 38.2222% -70 - C1 -1PSY - 2SS_RICCO -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
43 95.30100%-157 - C- -M043 - -
39 93.54100%-154 - C- -M039 - -
41 92.90100%-155 - C- -M041 - -
46 91.63100%-155 - C- -M046 - -