@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-07 )
LTCGQVTSTLAPCLPYLMNRGPLRNCCDGVKGLLGQAKTTVDRQAACTCLKSAASSFTGLNLGKAAALPNTCSVNIPYKISPSTDCSKVQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




15 HHSearch 94.3374%-132 - C4 -1T12 - NLTP1_TOBAC -
16 HHSearch 85.1753%-129 - C4 -2ALG 3.9 NLTP1_PRUPE
18 HHSearch 83.4650%-127 - C4 -1SIY - NLTP1_VIGRR -
11 SP3 82.9554%-131 - C4 -1FK5 6.0 NLTP_MAIZE
17 HHSearch 81.8253%-120 - C4 -1AFH - NLTP_MAIZE -
20 HHSearch 78.1347%-130 - C4 -1BWO 6.6 NLTP1_WHEAT
27 HHSearch 55.1727%-166 - C4 -1BEA - ITRF_MAIZE -
28 HHSearch 54.3731%-130 - C4 -1SM7 - ? -
30 HHSearch 46.3226% -91 - C4 -1PSY - 2SS_RICCO -
21 HHSearch 44.7125% -93 - C4 -2RKN - DIRL1_ARATH -
8 Fugue 44.6624% -99 - C4 -1S6D - 2SS8_HELAN -
25 HHSearch 44.6517%-150 - C4 -1B1U - IAAT_ELECO -
6 Fugue 44.1924% -77 - C4 -1PSY - 2SS_RICCO -
2 Fugue 43.9725% -92 - C4 -2RKN - DIRL1_ARATH -
32 HHSearch 43.8825%-124 - C4 -1S6D - 2SS8_HELAN -
29 HHSearch 38.7119%-109 - C4 -3OB4 - ? -
5 Fugue 37.9417% -73 - C4 -1W2Q - CONG_ARAHY -
3 Fugue 36.8120%-100 - C4 -1L6H - NLTPX_ORYSJ -
22 HHSearch 35.3721% -82 - C4 -1L6H - NLTPX_ORYSJ -
24 HHSearch 30.8331% -67 - C4 -1PNB - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




35 96.48100%-156 - C- -M035 - -
39 94.33100%-137 - C- -M039 - -
36 93.95100%-148 - C- -M036 - -
40 93.60100%-143 - C- -M040 - -