@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-07 )
GITCGMVSSKLAPCIGYLKGGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
21 HHSearch 96.7264%-131 - C2 -1T12 - NLTP1_TOBAC -
22 HHSearch 90.8457%-137 - C2 -2ALG 4.0 NLTP1_PRUPE
25 HHSearch 88.2951%-131 - C2 -1SIY - NLTP1_VIGRR -
11 SP3 85.9553%-130 - C2 -1FK5 5.2 NLTP_MAIZE
23 HHSearch 83.4755%-124 - C2 -1AFH - NLTP_MAIZE -
26 HHSearch 80.9544%-130 - C2 -1BWO 3.9 NLTP1_WHEAT
33 HHSearch 69.1631%-122 - C2 -1SM7 - ? -
19 SP3 59.3016%-142 - C2 -1HSS - IAA1_WHEAT -
40 HHSearch 58.9622%-152 - C2 -1HSS - IAA1_WHEAT -
34 HHSearch 58.5626%-143 - C2 -1BEA - ITRF_MAIZE -
6 Fugue 53.5222% -98 - C2 -1S6D - 2SS8_HELAN -
36 HHSearch 51.1725% -94 - C2 -1PSY - 2SS_RICCO -
27 HHSearch 50.9523% -98 - C2 -2RKN - DIRL1_ARATH -
2 Fugue 50.2223% -78 - C2 -2RKN - DIRL1_ARATH -
32 HHSearch 48.7319%-138 - C2 -1B1U - IAAT_ELECO -
8 Fugue 46.2921% -81 - C2 -1PSY - 2SS_RICCO -
5 Fugue 46.1722% -69 - C2 -1L6H - NLTPX_ORYSJ -
37 HHSearch 45.9518%-106 - C2 -1W2Q - CONG_ARAHY -
16 SP3 44.3915% -89 - C2 -1QPO - NADC_MYCTU -
38 HHSearch 43.2825% -94 - C2 -1S6D - 2SS8_HELAN -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
46 47.91100% - - C- -M046 - -
42 47.91100% - - C- -M042 - -
41 47.91100% - - C- -M041 - -