@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 393_tI_VIGRA: (2014-05-07 )
ITCGQVASSLAPCISYLQKGGVPSASCCSGVKALNSAASTTADRKTACNCLKNLAGPKSGINEGNAASLPGKCKVIVPYWISTFTNCANIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




32 SP3 90.6763%-103 - C3 -1FK5 5.3 NLTP_MAIZE
1 HHSearch 89.4657%-103 - C3 -2ALG 3.7 NLTP1_PRUPE
2 HHSearch 89.1857%-115 - C3 -1T12 - NLTP1_TOBAC -
4 HHSearch 86.0057%-107 - C3 -1SIY - NLTP1_VIGRR -
6 HHSearch 84.6448%-103 - C3 -1BWO 3.2 NLTP1_WHEAT
3 HHSearch 81.6664% -94 - C3 -1AFH - NLTP_MAIZE -
28 Fugue 58.7222% -92 - C3 -1S6D - 2SS8_HELAN -
14 HHSearch 57.4222%-123 - C3 -1BEA - ITRF_MAIZE -
12 HHSearch 56.6726%-107 - C3 -1S6D - 2SS8_HELAN -
17 HHSearch 56.1924% -97 - C3 -1SM7 - ? -
19 HHSearch 52.9318%-103 - C3 -1HSS - IAA1_WHEAT -
40 SP3 52.6117%-103 * C3 *1HSS - IAA1_WHEAT -
20 HHSearch 51.9820% -74 - C3 -2LVF - ? -
21 HHSearch 50.7920% -77 - C3 -1W2Q - CONG_ARAHY -
13 HHSearch 49.0719% -91 - C3 -1B1U - IAAT_ELECO -
39 SP3 48.9515% -91 - C3 -1QPO - NADC_MYCTU -
38 SP3 45.6415% -67 - C3 -1O4U - ? -
15 HHSearch 45.2423% -72 - C3 -1PSY - 2SS_RICCO -
16 HHSearch 44.1918% -60 - C3 -3OB4 - ? -
24 Fugue 42.9126% -59 - C3 -1L6H - NLTPX_ORYSJ -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




43 96.06100%-120 - C- -M043 - -
46 94.95100%-112 - C- -M046 - -
48 93.73100%-118 - C- -M048 - -