@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-07 )
AITCGQVSSAIAPCLSYARGMGSAPSAGCCSGVRNLKSAASTAADRRAACNCLKNAARGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




11 SP3 96.0887%-110 - C2 -1FK5 6.2 NLTP_MAIZE
21 HHSearch 92.5288%-112 - C2 -1AFH - NLTP_MAIZE -
22 HHSearch 87.4660%-112 - C2 -1T12 - NLTP1_TOBAC -
24 HHSearch 86.1457%-118 - C2 -2ALG 3.5 NLTP1_PRUPE
25 HHSearch 85.0257%-113 - C2 -1BWO 6.4 NLTP1_WHEAT
26 HHSearch 76.5848%-116 - C2 -1SIY - NLTP1_VIGRR -
33 HHSearch 55.7422%-136 - C2 -1BEA - ITRF_MAIZE -
39 HHSearch 54.5924%-128 - C2 -1HSS - IAA1_WHEAT -
35 HHSearch 53.8723%-106 - C2 -1SM7 - ? -
16 SP3 53.3918%-129 - C2 -1HSS - IAA1_WHEAT -
2 Fugue 52.7522% -71 - C2 -2RKN - DIRL1_ARATH -
19 SP3 51.0720%-115 - C2 -1QPO - NADC_MYCTU -
37 HHSearch 50.4027% -83 - C2 -1PSY - 2SS_RICCO -
14 SP3 50.3419%-107 - C2 -1QPO - NADC_MYCTU -
4 Fugue 49.8225% -65 - C2 -1PSY - 2SS_RICCO -
27 HHSearch 49.8120% -87 - C2 -2RKN - DIRL1_ARATH -
3 Fugue 48.7727%-103 - C2 -1L6H - NLTPX_ORYSJ -
32 HHSearch 48.0018%-109 - C2 -1B1U - IAAT_ELECO -
7 Fugue 46.4619% -76 - C2 -1S6D - 2SS8_HELAN -
36 HHSearch 45.0616%-103 - C2 -1S6D - 2SS8_HELAN -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




42 96.17100%-129 - C- -M042 - -
40 94.64100%-116 - C- -M040 - -
46 94.54100%-122 - C- -M046 - -