@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-08 )
AITCGQVSSAIAPCLSYARGTGSAPSGSCCSGVRNLKSAASTAADRRAACNCLKNAARGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




11 SP3 93.1486%-105 - C1 -1FK5 6.2 NLTP_MAIZE
21 HHSearch 89.1286%-106 - C1 -1AFH - NLTP_MAIZE -
26 HHSearch 87.2459%-112 - C1 -1BWO 6.6 NLTP1_WHEAT
22 HHSearch 86.0762%-111 - C1 -1T12 - NLTP1_TOBAC -
24 HHSearch 82.5457%-112 - C1 -2ALG 3.6 NLTP1_PRUPE
25 HHSearch 74.6349%-112 - C1 -1SIY - NLTP1_VIGRR -
33 HHSearch 55.6222%-132 - C1 -1BEA - ITRF_MAIZE -
16 SP3 53.1119%-118 - C1 -1HSS - IAA1_WHEAT -
18 SP3 51.0619%-108 - C1 -1QPO - NADC_MYCTU -
13 SP3 49.3618%-100 - C1 -1QPO - NADC_MYCTU -
34 HHSearch 48.8123%-109 - C1 -1SM7 - ? -
3 Fugue 46.6426%-100 - C1 -1L6H - NLTPX_ORYSJ -
2 Fugue 46.4422% -71 - C1 -2RKN - DIRL1_ARATH -
37 HHSearch 46.2526% -80 - C1 -1PSY - 2SS_RICCO -
4 Fugue 45.0425% -64 - C1 -1PSY - 2SS_RICCO -
32 HHSearch 44.8617% -99 - C1 -1B1U - IAAT_ELECO -
27 HHSearch 43.8520% -87 - C1 -2RKN - DIRL1_ARATH -
12 SP3 41.4420% -73 - C1 -1L6H - NLTPX_ORYSJ -
36 HHSearch 41.0816%-100 - C1 -1S6D - 2SS8_HELAN -
35 HHSearch 38.2920% -58 - C1 -3OB4 - ? -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]




DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]




LPC_A_3(1BWO)
NLTP1_WHEAT
[Raw transfer]




LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]




39 96.11100%-112 - C- -M039 - -
41 89.20100%-114 - C- -M041 - -