@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 470_tIV_POPTR: (2014-05-09 )
QSTICKMPVAGLMSCKPSVTPPNPTAPSADCCSALSHADLNCLCSYKNSNLLPSLGIDPKLAMQLPGKCKLPHPANC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]




LP3_A_5(2RKN)
DIRL1_ARATH
[Raw transfer]




11 HHSearch 98.3150%-129 - C2 -2RKN - DIRL1_ARATH -
1 Fugue 97.0349%-126 - C2 -2RKN 5.6 DIRL1_ARATH
35 SP3 76.7124%-126 - C2 -1HSS - IAA1_WHEAT -
17 HHSearch 70.9929%-110 - C2 -1SIY - NLTP1_VIGRR -
19 HHSearch 70.4932%-114 - C2 -2ALG - NLTP1_PRUPE -
23 HHSearch 70.3329% -90 * C2 *1HSS - IAA1_WHEAT -
38 SP3 69.2422%-103 - C2 -1S6D - 2SS8_HELAN -
18 HHSearch 63.4825%-101 - C2 -1T12 - NLTP1_TOBAC -
24 HHSearch 62.6027% -91 - C2 -1BEA - ITRF_MAIZE -
12 HHSearch 60.4125%-105 - C2 -1N89 - NLT2G_WHEAT -
32 SP3 60.0224%-105 - C2 -1FK5 - NLTP_MAIZE -
15 HHSearch 56.8227% -78 - C2 -1AFH - NLTP_MAIZE -
16 HHSearch 56.2221% -88 - C2 -1BWO - NLTP1_WHEAT -
26 HHSearch 56.1221% -83 - C2 -1SM7 - ? -
27 HHSearch 54.9925% -67 - C2 -2LVF - ? -
6 Fugue 54.7818%-102 * C3 *1X2I - ? -
34 SP3 53.2218%-110 - C2 -1HYP - ? -
28 HHSearch 52.9723% -69 - C2 -1B1U - IAAT_ELECO -
22 HHSearch 52.5622% -82 - C2 -1S6D - 2SS8_HELAN -
25 HHSearch 52.0824%-101 - C2 -3OB4 - ? -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]




LP3_A_5(2RKN)
DIRL1_ARATH
[Raw transfer]




46 97.89100%-139 - C- -M046 - -
45 97.21100%-139 - C- -M045 - -
44 95.66100%-145 - C- -M044 - -