@TOME V2.3
(Nov 2016)

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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 471_tIV_POPTR: (2014-05-09 )
VSVCDISEDGLAACKPSVTKPDPVEPPSVDCCKAVSGANFTCLCSYKNSYLLPYLGIDPDLAMALPSKCNLSTAVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]



LP3_A_5(2RKN)
DIRL1_ARATH
[Raw transfer]
9 HHSearch 96.7849%-144 - C3 -2RKN - DIRL1_ARATH -
1 Fugue 95.8350%-126 - C3 -2RKN 5.4 DIRL1_ARATH
29 HHSearch 71.6227%-101 - C3 -1BEA - ITRF_MAIZE -
37 SP3 66.8425%-111 - C3 -1BEA - ? -
17 HHSearch 66.4332% -87 - C3 -2ALG - NLTP1_PRUPE -
30 SP3 64.7125% -90 - C3 -1FK5 - NLTP_MAIZE -
32 SP3 63.9523%-124 - C3 -1HSS - IAA1_WHEAT -
11 HHSearch 63.7230% -63 - C3 -1AFH - NLTP_MAIZE -
24 HHSearch 63.6723% -55 - C3 -1HSS - IAA1_WHEAT -
12 HHSearch 62.8529% -76 - C3 -1SIY - NLTP1_VIGRR -
5 Fugue 61.2219% -77 - C3 -1S6D - 2SS8_HELAN -
15 HHSearch 59.4928% -83 - C3 -1T12 - NLTP1_TOBAC -
28 HHSearch 59.2522% -82 * C3 *1B1U - IAAT_ELECO -
23 HHSearch 57.7425% -83 - C3 -2LVF - ? -
10 HHSearch 57.3323% -99 - C3 -1N89 - NLT2G_WHEAT -
16 HHSearch 57.0124% -68 - C3 -1BWO - NLTP1_WHEAT -
26 HHSearch 54.7524% -97 - C3 -1SM7 - ? -
21 HHSearch 52.0024%-129 - C3 -3OB4 - ? -
22 HHSearch 50.2920% -87 - C3 -1W2Q - CONG_ARAHY -
38 SP3 49.9117%-102 - C2 -1HR6 - MPPA_YEAST -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]



LP3_A_5(2RKN)
DIRL1_ARATH
[Raw transfer]
46 93.78100%-148 - C- -M046 - -
45 88.84100%-141 - C- -M045 - -
42 37.69100% -12 - C- -M042 - -