@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 486_tIV_POPTR: (2014-05-09 )
QSTICKMPVAGLMSCKPSVTPPNPTAPSADCCSALSHADINCLCSYKNSNLLPSLGIDPKLAMQLPGKCKLPHPANC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_5(2RKN)
DIRL1_ARATH
[Raw transfer]




LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]




11 HHSearch 98.7750%-130 - C1 -2RKN - DIRL1_ARATH -
1 Fugue 97.5049%-127 - C1 -2RKN 5.6 DIRL1_ARATH
35 SP3 74.0224%-125 - C1 -1HSS - IAA1_WHEAT -
19 HHSearch 69.8932%-114 - C1 -2ALG - NLTP1_PRUPE -
38 SP3 66.9322%-104 - C1 -1S6D - 2SS8_HELAN -
16 HHSearch 66.5529%-101 - C1 -1SIY - NLTP1_VIGRR -
23 HHSearch 63.3029% -87 - C1 -1HSS - IAA1_WHEAT -
18 HHSearch 61.5725%-100 - C1 -1T12 - NLTP1_TOBAC -
24 HHSearch 61.4428% -84 * C1 *1BEA - ITRF_MAIZE -
32 SP3 58.1824%-104 - C1 -1FK5 - NLTP_MAIZE -
12 HHSearch 58.0525%-105 - C1 -1N89 - NLT2G_WHEAT -
14 HHSearch 55.6821% -88 - C1 -1BWO - NLTP1_WHEAT -
15 HHSearch 55.2427% -78 - C1 -1AFH - NLTP_MAIZE -
28 HHSearch 54.5423% -67 - C1 -1B1U - IAAT_ELECO -
6 Fugue 53.4918%-100 - C1 -1X2I - ? -
30 HHSearch 52.3625% -68 - C1 -2LVF - ? -
34 SP3 51.8419%-109 - C1 -1HYP - ? -
25 HHSearch 51.3024% -91 - C1 -3OB4 - ? -
26 HHSearch 50.8922% -81 - C1 -1SM7 - ? -
20 HHSearch 50.4226% -80 - C1 -2DS2 - ? -


User Run . : Multi Template Modeling Result:

(2 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_5(2RKN)
DIRL1_ARATH
[Raw transfer]




LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]




44 96.54100%-143 - C- -M044 - -
46 96.30100%-147 - C- -M046 - -