@TOME V2.3
(Nov 2016)

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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 505_tIV_MAIZE: (2014-05-09 )
AVCDMSNEQFMSCQPAAAKTTDPPAAPSQACCDALAGADLKCLCGYKNSPWMGVYNIDPKRAMELPAKCGLATPPDC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]
11 HHSearch 94.9351%-101 - C2 -2RKN - DIRL1_ARATH -
1 Fugue 91.8550% -99 - C2 -2RKN 5.5 DIRL1_ARATH
35 SP3 71.0023%-103 - C2 -1HSS - IAA1_WHEAT -
28 HHSearch 69.4828% -68 - C2 -1BEA - ITRF_MAIZE -
13 HHSearch 65.9431%-100 - C2 -1L6H - NLTPX_ORYSJ -
12 HHSearch 64.5535% -83 - C2 -1N89 - NLT2G_WHEAT -
5 Fugue 63.8526% -80 - C2 -1S6D - 2SS8_HELAN -
26 HHSearch 62.6826% -66 - C2 -1HSS - IAA1_WHEAT -
32 SP3 62.2825% -74 * C2 *1FK5 - NLTP_MAIZE -
19 HHSearch 60.8927% -80 - C2 -2ALG - NLTP1_PRUPE -
33 SP3 60.8027% -85 - C2 -1L6H - NLTPX_ORYSJ -
18 HHSearch 60.3026% -67 - C2 -1T12 - NLTP1_TOBAC -
17 HHSearch 60.2828% -67 - C2 -1SIY - NLTP1_VIGRR -
2 Fugue 60.2831% -90 - C2 -1L6H - NLTPX_ORYSJ -
29 HHSearch 59.9421% -54 - C2 -1B1U - IAAT_ELECO -
14 HHSearch 58.1525% -59 - C2 -1AFH - NLTP_MAIZE -
23 HHSearch 56.5024% -94 - C2 -3OB4 - ? -
34 SP3 55.7916%-108 - C2 -1HYP - ? -
22 HHSearch 54.6024% -82 - C2 -1S6D - 2SS8_HELAN -
16 HHSearch 53.2324% -58 - C2 -1BWO - NLTP1_WHEAT -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LP3_A_6(2RKN)
DIRL1_ARATH
[Raw transfer]
49 99.03100%-118 - C- -M049 - -
42 94.78100%-104 - C- -M042 - -
48 92.54100%-109 - C- -M048 - -