@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-10 )
VTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNIPYAISPSTDCSRVH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
11 SP3 93.6858%-121 - C3 -1FK5 5.9 NLTP_MAIZE
18 HHSearch 93.1554%-135 - C3 -1T12 - NLTP1_TOBAC -
17 HHSearch 91.7159%-122 - C3 -1AFH - NLTP_MAIZE -
22 HHSearch 89.5546%-119 - C3 -1BWO - NLTP1_WHEAT -
20 HHSearch 88.1251%-121 - C3 -2ALG 3.7 NLTP1_PRUPE
21 HHSearch 87.7542%-128 - C3 -1SIY - NLTP1_VIGRR -
30 HHSearch 51.5118%-141 - C3 -1BEA - ITRF_MAIZE -
31 HHSearch 50.8519%-116 - C3 -1SM7 - ? -
2 Fugue 45.7520% -95 - C3 -2RKN - DIRL1_ARATH -
33 HHSearch 44.8921% -93 - C3 -1PSY - 2SS_RICCO -
3 Fugue 44.4523%-110 - C3 -1L6H - NLTPX_ORYSJ -
27 HHSearch 44.1518%-114 - C3 -1S6D - 2SS8_HELAN -
23 HHSearch 44.0020% -85 - C3 -2RKN - DIRL1_ARATH -
7 Fugue 43.8311%-104 - C3 -3ZCO - -
8 Fugue 43.6820% -77 - C3 -1PSY - 2SS_RICCO -
24 HHSearch 42.6426%-108 - C3 -1L6H - NLTPX_ORYSJ -
32 HHSearch 41.8718% -53 - C3 -3OB4 - ? -
29 HHSearch 40.6215% -88 - C3 -1B1U - IAAT_ELECO -
5 Fugue 40.4722% -78 - C3 -1W2Q - CONG_ARAHY -
12 SP3 36.8611%-101 - C2 -1EHX - ? -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
41 96.37100%-133 - C- -M041 - -
39 94.55100%-128 - C- -M039 - -
36 42.60100% - - C- -M036 - -
40 42.56100% - - C- -M040 - -