@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-10 )
APPSCQTVTTQLAPCLSYIQNRVKGGGNPSVPCCTGINNIYELAKTKEDRVAICNCLKNAFIHAGNVNPTLVAELPKKCGISFNMPPIDKNYDCNT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]
23 HHSearch 94.1338%-138 - C3 -1T12 - NLTP1_TOBAC -
22 HHSearch 90.9442%-131 - C3 -2ALG 3.1 NLTP1_PRUPE
21 HHSearch 90.0740%-117 - C3 -1AFH - NLTP_MAIZE -
11 SP3 88.1037%-116 - C3 -1FK5 - NLTP_MAIZE -
26 HHSearch 87.9337%-130 - C3 -1SIY - NLTP1_VIGRR -
25 HHSearch 87.2537%-108 - C3 -1BWO - NLTP1_WHEAT -
35 HHSearch 60.3521%-152 - C3 -1BEA - ITRF_MAIZE -
30 HHSearch 60.0223%-151 - C3 -1SM7 - ? -
2 Fugue 58.5127%-101 - C3 -2RKN - DIRL1_ARATH -
27 HHSearch 53.5128%-105 - C3 -2RKN - DIRL1_ARATH -
36 HHSearch 51.5116%-110 - C3 -1B1U - IAAT_ELECO -
9 Fugue 51.0816% -92 - C3 -1S6D - 2SS8_HELAN -
4 Fugue 50.0215%-106 - C3 -1W2Q - CONG_ARAHY -
8 Fugue 49.6213% -90 - C3 -1PSY - 2SS_RICCO -
3 Fugue 47.7326% -85 - C3 -1L6H - NLTPX_ORYSJ -
10 Fugue 46.9013% -85 - C3 -2C5K - TLG1_YEAST -
31 HHSearch 45.9718%-115 - C3 -3OB4 - ? -
29 HHSearch 43.0527% -83 - C3 -1N89 - NLT2G_WHEAT -
28 HHSearch 41.4828% -92 - C3 -1L6H - NLTPX_ORYSJ -
17 SP3 35.2410% -65 - C3 -1NGK - TRHBO_MYCTU -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]
42 30.34100% 31 - C- -M042 - -
38 29.10100% 22 - C- -M038 - -
41 28.81100% 29 - C- -M041 - -