@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 530_tII_ORYSI: (2014-05-10 )
QCDPEQLVACASPIFYGTAPSESCCSNLREQQKEGCLCQYAKDPMYASYVNNTNARKTIAACGIPIPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
26 SP3 89.2850%-116 - C4 -1L6H - NLTPX_ORYSJ -
1 Fugue 88.9050%-114 - C4 -1L6H - NLTPX_ORYSJ -
11 HHSearch 88.7951% -97 - C4 -1N89 4.0 NLT2G_WHEAT
12 HHSearch 88.4651%-114 - C4 -1L6H - NLTPX_ORYSJ -
2 Fugue 75.1729% -94 - C4 -2RKN - DIRL1_ARATH -
27 SP3 70.7328% -78 - C4 -1FK5 - NLTP_MAIZE -
13 HHSearch 70.7328%-102 - C4 -2RKN - DIRL1_ARATH -
17 HHSearch 69.8136% -76 - C4 -2ALG - NLTP1_PRUPE -
19 HHSearch 69.7026% -86 - C4 -1T12 - NLTP1_TOBAC -
18 HHSearch 68.8933% -90 - C4 -1AFH - NLTP_MAIZE -
15 HHSearch 68.6526% -74 - C4 -1SIY - NLTP1_VIGRR -
32 SP3 68.3021% -96 * C4 *1HYP - ? -
28 SP3 63.4521% -82 - C4 -1QNT - MGMT_HUMAN -
21 HHSearch 60.8324% -88 - C4 -1HYP - HPSE_SOYBN -
5 Fugue 59.7518%-101 - C4 -2LSE - ? -
4 Fugue 59.1017%-104 - C4 -1S6D - 2SS8_HELAN -
24 HHSearch 58.2226% -52 - C4 -3OB4 - ? -
14 HHSearch 57.5528% -55 - C4 -1BWO - NLTP1_WHEAT -
30 SP3 48.0114% -79 - C4 -1XPJ - ? -
33 SP3 43.4813% -84 - C3 -1KZF - ESAI_ERWST -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
43 95.53100%-107 - C- -M043 - -
40 92.97100% -89 - C- -M040 - -
42 88.24100%-101 - C- -M042 - -