@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : 547_tII_HORVU: (2014-05-10 )
ATCNALQLTPCAGAIMGNAAPTASCCSKMREQQPCMCQYARDPNLKQYVDSPNGKKVMAACKVPVPSC

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
1 HHSearch 88.6045%-101 - C3 -1N89 5.6 NLT2G_WHEAT
2 HHSearch 88.1354%-106 - C3 -1L6H - NLTPX_ORYSJ -
26 SP3 87.7854%-106 - C3 -1L6H - NLTPX_ORYSJ -
16 Fugue 87.7854%-106 - C3 -1L6H - NLTPX_ORYSJ -
17 Fugue 75.0323% -82 - C3 -2RKN - DIRL1_ARATH -
3 HHSearch 70.5423% -85 - C3 -2RKN - DIRL1_ARATH -
27 SP3 64.0126% -64 - C3 -1FK5 - NLTP_MAIZE -
8 HHSearch 62.3826% -89 - C3 -1AFH - NLTP_MAIZE -
35 SP3 59.9520%-122 - C3 -1S6D - 2SS8_HELAN -
5 HHSearch 58.7929% -83 - C3 -2ALG - NLTP1_PRUPE -
10 HHSearch 56.6520% -90 - C3 -1HYP - HPSE_SOYBN -
4 HHSearch 55.6421% -52 - C3 -1BWO - NLTP1_WHEAT -
7 HHSearch 55.5121% -58 - C3 -1SIY - NLTP1_VIGRR -
20 Fugue 55.4712%-107 - C3 -3ZR8 - ? -
9 HHSearch 53.4521% -60 - C3 -1T12 - NLTP1_TOBAC -
29 SP3 48.5813% -59 - C3 -1KNG - CYCY_BRADU -
19 Fugue 47.5418% -79 - C3 -2LSE - ? -
30 SP3 45.3413% -58 - C3 -1PS6 - PDXA_ECOLI -
28 SP3 43.7210% -71 - C3 -1U78 - TC3A_CAEEL -
34 SP3 42.5910% -73 * C3 *1TC3 - TC3A_CAEEL -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGM_B_2(1N89)
NLT2G_WHEAT
[Raw transfer]
41 94.92100%-101 - C- -M041 - -
40 91.96100% -91 - C- -M040 - -
42 83.38100%-104 - C- -M042 - -