@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1F1_RORa: (2016-04-07 )
MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARRDELFGILQILHQCILSSGDAFVLTGVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C3S_B_2(1S0X)

[Raw transfer]




4D8_B_7(4S15)

[Raw transfer]




4D8_A_5(4S15)
RORA_HUMAN
[Raw transfer]




NBH_B_7(4NIE)

[Raw transfer]




NBH_A_5(4NIE)
RORG_HUMAN
[Raw transfer]




ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]




REA_C_3(1N4H)
RORB_RAT
[Raw transfer]




HC3_B_6(3L0L)

[Raw transfer]




3QQ_B_8(4WLB)

[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




4D8_A_3(4S14)

[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




43V_A_3(4XT9)
?
[Raw transfer]




3QQ_A_5(4WLB)
RORG_HUMAN
[Raw transfer]




HC3_A_5(3L0L)
RORG_HUMAN
[Raw transfer]




HC2_A_3(3KYT)

[Raw transfer]




DGX_B_4(3B0W)

[Raw transfer]




HC9_A_3(3L0J)

[Raw transfer]




39K_C_5(4QM0)

[Raw transfer]




39K_A_3(4QM0)
RORG_HUMAN
[Raw transfer]




DGX_A_3(3B0W)
RORG_HUMAN
[Raw transfer]




3SX_B_6(4WQP)

[Raw transfer]




3SX_A_4(4WQP)
RORG_HUMAN
[Raw transfer]




3SN_A_5(4WPF)
RORG_HUMAN
[Raw transfer]




4Q3_D_8(4ZOM)
?
[Raw transfer]




3SN_D_6(4WPF)
RORG_HUMAN
[Raw transfer]




4Q3_B_6(4ZOM)

[Raw transfer]




4Q3_A_5(4ZOM)
RORG_HUMAN
[Raw transfer]




4Q3_C_7(4ZOM)
?
[Raw transfer]




ZBD_A_4(4YMQ)
?
[Raw transfer]




4P3_D_8(4ZJR)
?
[Raw transfer]




4P3_A_5(4ZJR)

[Raw transfer]




STE_C_3(1K4W)
RORB_RAT
[Raw transfer]




444_B_4(4NB6)

[Raw transfer]




4P3_B_6(4ZJR)
?
[Raw transfer]




4P3_C_7(4ZJR)
?
[Raw transfer]




444_A_3(4NB6)
RORG_HUMAN
[Raw transfer]




4P1_A_3(4ZJW)
RORG_HUMAN
[Raw transfer]




2 PsiBlast_PDB 93.22100%-139 - C2 -1N83 8.9
113 HHSearch 92.67100%-139 - C2 -1N83 8.9
3 PsiBlast_PDB 92.66100%-139 - C2 -1S0X 10.2
21 PsiBlast_CBE 91.62100%-132 - C2 -4S15 8.7
1 PsiBlast_PDB 91.18100%-136 - C2 -4S15 9.0 RORA_HUMAN
6 PsiBlast_PDB 81.7162%-133 - C2 -1NQ7 8.3 RORB_RAT
8 PsiBlast_PDB 81.6853%-128 - C2 -4NIE 7.6 RORG_HUMAN
4 PsiBlast_PDB 81.0162%-132 - C2 -1K4W 2.6 RORB_RAT
15 PsiBlast_PDB 80.9552%-124 - C2 -3L0L 7.9 RORG_HUMAN
22 PsiBlast_CBE 80.9153%-126 - C2 -4NIE 8.7
28 PsiBlast_CBE 80.6452%-123 - C2 -3L0L 8.1
27 PsiBlast_CBE 80.4852%-124 - C2 -4WLB 6.2
5 PsiBlast_PDB 80.4761%-130 - C2 -1N4H 6.5 RORB_RAT
17 PsiBlast_PDB 80.3253%-128 - C2 -3L0J 8.1
16 PsiBlast_PDB 79.9953%-130 - C2 -3KYT 7.9
23 PsiBlast_CBE 79.8252%-123 - C2 -4WPF 6.2 RORG_HUMAN
19 PsiBlast_PDB 79.2453%-125 - C2 -4XT9 7.2 ?
7 PsiBlast_PDB 79.1852%-122 - C2 -4S14 7.3
9 PsiBlast_PDB 79.0652%-118 - C2 -4WPF 5.9 RORG_HUMAN
13 PsiBlast_PDB 78.9052%-121 - C2 -4WLB 6.5 RORG_HUMAN
12 PsiBlast_PDB 78.8152%-126 - C2 -4YMQ 8.9 ?
11 PsiBlast_PDB 76.8652%-117 - C2 -4QM0 6.3 RORG_HUMAN
24 PsiBlast_CBE 76.7852%-119 - C2 -4QM0 6.4
14 PsiBlast_PDB 76.7252%-119 - C2 -4WQP 8.2 RORG_HUMAN
26 PsiBlast_CBE 75.7752%-118 - C2 -4WQP 8.0
31 PsiBlast_CBE 75.5152%-120 - C2 -4ZOM 7.3 ?
32 PsiBlast_CBE 75.4152%-121 - C2 -4ZOM 7.6
25 PsiBlast_CBE 75.2052%-117 - C2 -4NB6 4.6
34 PsiBlast_CBE 75.0152%-123 - C2 -4ZJW 5.7 RORG_HUMAN
37 PsiBlast_CBE 74.9052%-115 - C2 -4ZJR 7.4 ?
33 PsiBlast_CBE 74.8852%-120 - C2 -4ZOM 8.0 RORG_HUMAN
10 PsiBlast_PDB 74.6852%-117 - C2 -4NB6 4.6 RORG_HUMAN
35 PsiBlast_CBE 74.3652%-119 - C2 -4ZJR 6.1 ?
18 PsiBlast_PDB 74.2853%-123 - C2 -3B0W 8.0 RORG_HUMAN
29 PsiBlast_CBE 74.2253%-119 - C2 -3B0W 8.8
36 PsiBlast_CBE 74.1852%-112 - C2 -4ZJR 7.2 ?
30 PsiBlast_CBE 73.7152%-118 - C2 -4ZOM 7.4 ?
20 PsiBlast_PDB 73.4052%-117 - C2 -4ZJR 8.3