@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1F2_RORb: (2016-04-07 )
MCENQLKTKADATAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNETSGTYANGHVIDLPKSEGYYNVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPEIVNTLFPPLYKELFNPDCATGCK

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]




REA_C_3(1N4H)
RORB_RAT
[Raw transfer]




C3S_B_2(1S0X)

[Raw transfer]




4D8_B_7(4S15)

[Raw transfer]




NBH_B_7(4NIE)

[Raw transfer]




4D8_A_5(4S15)
RORA_HUMAN
[Raw transfer]




4D8_A_3(4S14)

[Raw transfer]




HC3_B_6(3L0L)

[Raw transfer]




NBH_A_5(4NIE)
RORG_HUMAN
[Raw transfer]




3QQ_B_8(4WLB)

[Raw transfer]




3QQ_A_5(4WLB)
RORG_HUMAN
[Raw transfer]




STE_C_3(1K4W)
RORB_RAT
[Raw transfer]




HC3_A_5(3L0L)
RORG_HUMAN
[Raw transfer]




43V_A_3(4XT9)
?
[Raw transfer]




HC2_A_3(3KYT)

[Raw transfer]




39K_C_5(4QM0)

[Raw transfer]




HC9_A_3(3L0J)

[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




39K_A_3(4QM0)
RORG_HUMAN
[Raw transfer]




3SX_A_4(4WQP)
RORG_HUMAN
[Raw transfer]




3SX_B_6(4WQP)

[Raw transfer]




DGX_A_3(3B0W)
RORG_HUMAN
[Raw transfer]




4Q3_D_8(4ZOM)
?
[Raw transfer]




DGX_B_4(3B0W)

[Raw transfer]




4Q3_A_5(4ZOM)
RORG_HUMAN
[Raw transfer]




4Q3_B_6(4ZOM)

[Raw transfer]




4Q3_C_7(4ZOM)
?
[Raw transfer]




3SN_A_5(4WPF)
RORG_HUMAN
[Raw transfer]




3SN_D_6(4WPF)
RORG_HUMAN
[Raw transfer]




4P3_D_8(4ZJR)
?
[Raw transfer]




ZBD_A_4(4YMQ)
?
[Raw transfer]




444_A_3(4NB6)
RORG_HUMAN
[Raw transfer]




444_B_4(4NB6)

[Raw transfer]




4P3_C_7(4ZJR)
?
[Raw transfer]




4P3_B_6(4ZJR)
?
[Raw transfer]




4P3_A_5(4ZJR)

[Raw transfer]




4P1_A_3(4ZJW)
RORG_HUMAN
[Raw transfer]




3 PsiBlast_PDB 96.1998%-132 - C2 -1NQ7 8.2 RORB_RAT
1 PsiBlast_PDB 95.2998%-130 - C2 -1N4H 7.3 RORB_RAT
2 PsiBlast_PDB 93.9898%-133 - C2 -1K4W 6.0 RORB_RAT
4 PsiBlast_PDB 83.6761%-125 - C2 -4S15 8.5 RORA_HUMAN
6 PsiBlast_PDB 82.6261%-122 - C2 -1S0X 9.5
5 PsiBlast_PDB 82.4361%-123 - C2 -1N83 8.1
21 PsiBlast_CBE 81.7561%-118 - C2 -4S15 8.2
97 HHSearch 81.7461%-125 - C2 -1N83 8.1
14 PsiBlast_PDB 81.1849%-121 - C2 -3L0L 8.1 RORG_HUMAN
17 PsiBlast_PDB 80.6848%-122 - C2 -3L0J 8.3
27 PsiBlast_CBE 80.2949%-118 - C2 -3L0L 8.3
7 PsiBlast_PDB 79.8448%-122 - C2 -4S14 7.3
8 PsiBlast_PDB 79.5448%-114 - C2 -4WPF 6.0 RORG_HUMAN
10 PsiBlast_PDB 79.2950%-111 - C2 -4WLB 6.1 RORG_HUMAN
28 PsiBlast_CBE 79.2248%-120 - C2 -4NIE 7.9
24 PsiBlast_CBE 79.2150%-115 - C2 -4WLB 6.3
16 PsiBlast_PDB 79.1648%-123 - C2 -3KYT 7.4
15 PsiBlast_PDB 79.1648%-120 - C2 -4NIE 6.7 RORG_HUMAN
9 PsiBlast_PDB 78.5950%-115 - C2 -4YMQ 9.0 ?
19 PsiBlast_PDB 78.2848%-119 - C2 -4XT9 6.7 ?
22 PsiBlast_CBE 77.9848%-116 - C2 -4WPF 5.7 RORG_HUMAN
11 PsiBlast_PDB 74.3750%-111 - C2 -4WQP 8.1 RORG_HUMAN
18 PsiBlast_PDB 74.0548%-120 - C2 -3B0W 8.0 RORG_HUMAN
32 PsiBlast_CBE 74.0048%-125 - C2 -4ZOM 7.8
35 PsiBlast_CBE 73.8748%-119 - C2 -4ZJR 5.3 ?
33 PsiBlast_CBE 73.7448%-118 - C2 -4ZOM 8.2 RORG_HUMAN
23 PsiBlast_CBE 73.6150%-114 - C2 -4WQP 7.8
30 PsiBlast_CBE 73.2848%-119 - C2 -4ZOM 7.3 ?
29 PsiBlast_CBE 73.1248%-117 - C2 -3B0W 8.3
25 PsiBlast_CBE 73.1149%-115 - C2 -4QM0 6.1
31 PsiBlast_CBE 73.0748%-123 - C2 -4ZOM 8.7 ?
13 PsiBlast_PDB 73.0749%-114 - C2 -4QM0 6.6 RORG_HUMAN
26 PsiBlast_CBE 72.1849%-117 - C2 -4NB6 3.6
37 PsiBlast_CBE 71.9148%-113 - C2 -4ZJR 6.7 ?
12 PsiBlast_PDB 71.8449%-119 - C2 -4NB6 3.4 RORG_HUMAN
34 PsiBlast_CBE 71.6248%-118 - C2 -4ZJW 5.9 RORG_HUMAN
20 PsiBlast_PDB 71.6148%-119 - C2 -4ZJR 7.8
36 PsiBlast_CBE 69.7448%-115 - C2 -4ZJR 7.4 ?