@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H2_LXRb: (2016-04-07 )
MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]




IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]




1 PsiBlast_PDB 91.18100%-112 - C4 -4NQA - NR1H2_HUMAN (first) -
184 Fugue 90.97100%-105 - C4 -4NQA - NR1H2_HUMAN -
21 PsiBlast_CBE 90.97100%-105 - C4 -4NQA - NR1H2_HUMAN -
30 PsiBlast_CBE 80.11100%-130 - C4 -1PQ6 11.9 NR1H2_HUMAN
24 PsiBlast_CBE 79.81100%-129 - C4 -1PQC 3.4 NR1H2_HUMAN
4 PsiBlast_PDB 79.69100%-123 - C4 -1PQ6 2.1 NR1H2_HUMAN
34 PsiBlast_CBE 79.5698%-120 - C4 -4DK8 8.4 NR1H2_HUMAN
27 PsiBlast_CBE 79.49100%-130 - C4 -1PQ9 6.1 NR1H2_HUMAN
11 PsiBlast_PDB 79.3397%-119 - C4 -3L0E 10.3 NR1H2_HUMAN
31 PsiBlast_CBE 79.19100%-116 - C4 -1PQ6 12.6 NR1H2_HUMAN
25 PsiBlast_CBE 79.00100%-118 - C4 -1PQC 8.0 NR1H2_HUMAN
23 PsiBlast_CBE 78.96100%-117 - C4 -3KFC 10.4 NR1H2_HUMAN
28 PsiBlast_CBE 78.91100%-115 - C4 -1PQ9 5.8 NR1H2_HUMAN
22 PsiBlast_CBE 78.90100%-115 - C4 -3KFC 9.4 NR1H2_HUMAN
7 PsiBlast_PDB 78.76100%-118 - C4 -3KFC - NR1H2_HUMAN -
6 PsiBlast_PDB 78.73100%-118 - C4 -1PQC - NR1H2_HUMAN -
32 PsiBlast_CBE 78.6097%-118 - C4 -4RAK 12.0 NR1H2_HUMAN
2 PsiBlast_PDB 78.51100%-122 - C4 -1UPV - NR1H2_HUMAN -
10 PsiBlast_PDB 78.4398%-117 - C4 -4DK8 8.8 NR1H2_HUMAN
12 PsiBlast_PDB 78.3496%-120 - C4 -4DK7 6.6 NR1H2_HUMAN
29 PsiBlast_CBE 78.22100%-112 - C4 -1PQ9 5.9 NR1H2_HUMAN
33 PsiBlast_CBE 78.1799%-112 - C4 -1P8D 9.2 NR1H2_HUMAN
26 PsiBlast_CBE 78.08100%-112 - C4 -1PQC 8.4 NR1H2_HUMAN
9 PsiBlast_PDB 78.0099%-113 - C4 -1P8D 9.1 NR1H2_HUMAN
14 PsiBlast_PDB 74.7377%-116 - C4 -3FC6 13.3 NR1H3_MOUSE
16 PsiBlast_PDB 74.5376%-119 - C4 -3IPQ 12.6 NR1H3_HUMAN
17 PsiBlast_PDB 74.0076%-121 - C4 -3IPS 9.7 NR1H3_HUMAN
38 PsiBlast_CBE 73.9477%-110 - C4 -3FC6 13.1 NR1H3_MOUSE
20 PsiBlast_PDB 73.8776%-121 - C4 -5AVL 11.1 ?
42 PsiBlast_CBE 73.8376%-119 - C4 -3IPS 8.5 NR1H3_HUMAN
40 PsiBlast_CBE 73.7276%-119 - C4 -5AVI 9.7 ?
15 PsiBlast_PDB 73.6377%-115 - C4 -3FAL 9.6 NR1H3_MOUSE
41 PsiBlast_CBE 73.0976%-110 - C4 -3IPU 8.9 NR1H3_HUMAN
8 PsiBlast_PDB 73.0097%-110 - C4 -4RAK 2.4 NR1H2_HUMAN
39 PsiBlast_CBE 72.8477%-114 - C4 -3FAL 10.0 NR1H3_MOUSE
19 PsiBlast_PDB 72.7776%-119 - C4 -5AVI 9.5 ?
18 PsiBlast_PDB 72.3076%-111 - C4 -3IPU 9.0 NR1H3_HUMAN
196 HHSearch 70.1680%-122 - C4 -3IPQ 12.6 NR1H3_HUMAN
43 PsiBlast_CBE 69.6578%-117 - C4 -1UHL 5.8 NR1H3_HUMAN