@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H3_LXRa: (2016-04-07 )
MSLWLGAPVPDIPPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVGLEAAEPTALLTRAEPPSEPTEIRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




965_A_5(1PQ6)
NR1H2_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




61X_A_5(3KFC)
NR1H2_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




444_E_5(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPW)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPV)
NR1H2_HUMAN
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




652_A_5(4RAK)
NR1H2_HUMAN
[Raw transfer]




44B_F_6(1PQ9)
NR1H2_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




191 Fugue 91.3273%-109 * C3 *4NQA - NR1H2_HUMAN -
24 PsiBlast_CBE 89.6868%-107 - C2 -4NQA - NR1H2_HUMAN -
6 PsiBlast_PDB 88.9968%-113 - C2 -4NQA - NR1H2_HUMAN (first) -
21 PsiBlast_CBE 82.81100%-127 - C2 -5AVI 9.6 ?
4 PsiBlast_PDB 82.24100%-128 - C2 -5AVI 9.5 ?
23 PsiBlast_CBE 82.13100%-130 - C2 -3IPS 8.5 NR1H3_HUMAN
5 PsiBlast_PDB 81.72100%-128 - C2 -5AVL 11.1 ?
2 PsiBlast_PDB 81.57100%-129 - C2 -3IPS 9.6 NR1H3_HUMAN
172 HHSearch 81.45100%-130 - C2 -3IPQ 12.6 NR1H3_HUMAN
1 PsiBlast_PDB 81.45100%-130 - C2 -3IPQ 12.6 NR1H3_HUMAN
22 PsiBlast_CBE 81.36100%-120 - C2 -3IPU 8.9 NR1H3_HUMAN
9 PsiBlast_PDB 81.2195%-121 - C2 -3FAL 9.6 NR1H3_MOUSE
3 PsiBlast_PDB 81.01100%-121 - C2 -3IPU 8.8 NR1H3_HUMAN
25 PsiBlast_CBE 80.5095%-118 - C2 -3FC6 13.1 NR1H3_MOUSE
26 PsiBlast_CBE 80.4395%-119 - C2 -3FAL 10.0 NR1H3_MOUSE
8 PsiBlast_PDB 80.3795%-125 - C2 -3FC6 13.3 NR1H3_MOUSE
10 PsiBlast_PDB 79.8898%-113 - C2 -2ACL - NR1H3_MOUSE -
7 PsiBlast_PDB 78.4599%-119 - C2 -1UHL 5.8 NR1H3_HUMAN
30 PsiBlast_CBE 77.1276%-113 - C2 -1P8D 9.2 NR1H2_HUMAN
11 PsiBlast_PDB 76.3376%-114 - C2 -1P8D 9.1 NR1H2_HUMAN
33 PsiBlast_CBE 76.0476%-115 - C2 -3KFC 10.3 NR1H2_HUMAN
31 PsiBlast_CBE 76.0376%-116 - C2 -4RAK 12.0 NR1H2_HUMAN
16 PsiBlast_PDB 75.9876%-115 - C2 -1PQ9 5.9 NR1H2_HUMAN
18 PsiBlast_PDB 75.8776%-117 - C2 -3KFC 10.3 NR1H2_HUMAN
20 PsiBlast_PDB 75.7175%-117 - C2 -3L0E 10.3 NR1H2_HUMAN
17 PsiBlast_PDB 75.6776%-116 - C2 -1PQC 7.8 NR1H2_HUMAN
39 PsiBlast_CBE 75.5976%-111 - C2 -1PQ9 5.9 NR1H2_HUMAN
37 PsiBlast_CBE 75.5976%-127 - C2 -1PQ9 6.1 NR1H2_HUMAN
34 PsiBlast_CBE 75.5976%-127 - C2 -1PQC 3.4 NR1H2_HUMAN
36 PsiBlast_CBE 75.4776%-110 - C2 -1PQC 8.4 NR1H2_HUMAN
41 PsiBlast_CBE 75.4176%-114 - C2 -1PQ6 12.6 NR1H2_HUMAN
15 PsiBlast_PDB 75.4076%-121 - C2 -1PQ6 11.7 NR1H2_HUMAN
35 PsiBlast_CBE 75.3276%-116 - C2 -1PQC 8.0 NR1H2_HUMAN
19 PsiBlast_PDB 75.0776%-117 - C2 -4DK8 8.8 NR1H2_HUMAN
38 PsiBlast_CBE 74.9876%-114 - C2 -1PQ9 5.8 NR1H2_HUMAN
32 PsiBlast_CBE 74.9576%-111 - C2 -3KFC 9.4 NR1H2_HUMAN
14 PsiBlast_PDB 74.7376%-116 - C2 -1UPW 5.9 NR1H2_HUMAN
13 PsiBlast_PDB 74.6776%-120 - C2 -1UPV 6.4 NR1H2_HUMAN
40 PsiBlast_CBE 74.3876%-129 - C2 -1PQ6 11.9 NR1H2_HUMAN
42 PsiBlast_CBE 74.2576%-121 - C2 -4DK8 8.4 NR1H2_HUMAN
12 PsiBlast_PDB 71.7276%-109 - C2 -4RAK 10.2 NR1H2_HUMAN