@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H4_FXR: (2016-04-07 )
MVMQFQGLENPIQISPHCSCTPSGFFMEMMSMKPAKGVLTEQVAGPLGQNLEVEPYSQYSNVQFPQVQPQISSSSYYSNLGFYPQQPEEWYSPGIYELRRMPAETLYQGETEVAEMPVTKKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ

Atome Classification :

(158 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OOK_C_6(3OOK)

[Raw transfer]




OLF_C_6(3OLF)

[Raw transfer]




OOF_C_6(3OOF)

[Raw transfer]




OOK_A_5(3OOK)
NR1H4_HUMAN
[Raw transfer]




OMM_A_5(3OMM)
NR1H4_HUMAN
[Raw transfer]




OLF_A_5(3OLF)
NR1H4_HUMAN
[Raw transfer]




OMM_C_6(3OMM)

[Raw transfer]




OOF_A_5(3OOF)
NR1H4_HUMAN
[Raw transfer]




OKI_A_5(3OKI)
NR1H4_HUMAN
[Raw transfer]




OMK_A_5(3OMK)
NR1H4_HUMAN
[Raw transfer]




OMK_C_6(3OMK)

[Raw transfer]




OKI_C_6(3OKI)

[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




59G_A_5(3RUT)

[Raw transfer]




O62_A_3(3DCU)

[Raw transfer]




088_A_3(3HC6)

[Raw transfer]




37G_A_5(3RUU)

[Raw transfer]




P88_A_3(3P88)

[Raw transfer]




33Y_A_2(3FLI)

[Raw transfer]




82X_A_3(3HC5)

[Raw transfer]




OKH_A_4(3OKH)

[Raw transfer]




635_A_2(3L1B)

[Raw transfer]




89P_A_3(3P89)

[Raw transfer]




MUF_B_8(3BEJ)

[Raw transfer]




064_A_3(3DCT)

[Raw transfer]




31D_A_5(4QE8)
?
[Raw transfer]




IU5_F_6(1OT7)

[Raw transfer]




JN3_A_3(4QE6)
?
[Raw transfer]




708_A_3(3GD2)

[Raw transfer]




CHC_G_7(1OT7)
NR1H4_RAT
[Raw transfer]




MUF_A_7(3BEJ)
NR1H4_HUMAN
[Raw transfer]




XX9_A_3(4OIV)
NR1H4_HUMAN
[Raw transfer]




FEX_B_2(1OSH)

[Raw transfer]




034_A_4(3RVF)

[Raw transfer]




T08_A_3(3W0J)
VDR_RAT
[Raw transfer]




CHC_G_7(1OSV)
NR1H4_RAT
[Raw transfer]




IVM_A_9(4WVD)
NR1H4_HUMAN
[Raw transfer]




643_A_3(3FXV)

[Raw transfer]




CHC_F_6(1OSV)

[Raw transfer]




XX9_B_4(4OIV)

[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




YI3_A_3(3VT8)
VDR_RAT
[Raw transfer]




JB1_A_3(2ZXM)
VDR_RAT
[Raw transfer]




W07_A_3(3W0G)
VDR_RAT
[Raw transfer]




0VO_A_3(4G1Y)
VDRA_DANRE
[Raw transfer]




0VQ_A_3(4G2H)
VDRA_DANRE
[Raw transfer]




YI4_A_3(3VT9)
VDR_RAT
[Raw transfer]




TK3_A_3(3VTC)
VDR_RAT
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




XE4_C_3(2HBH)
VDRA_DANRE
[Raw transfer]




VD2_C_3(1RKH)
VDR_RAT
[Raw transfer]




YR3_A_3(2ZFX)
VDR_RAT
[Raw transfer]




VDX_A_3(3VT7)
VDR_RAT
[Raw transfer]




0S4_A_3(4FHI)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G21)
VDRA_DANRE
[Raw transfer]




ICJ_A_3(3AFR)
VDR_RAT
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




5YI_A_3(3VT4)
VDR_RAT
[Raw transfer]




TKD_A_3(3VTD)
VDR_RAT
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




H97_A_3(3O1E)
VDRA_DANRE
[Raw transfer]




YR4_A_3(3AUN)
VDR_RAT
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




W12_A_3(3W0H)
VDR_RAT
[Raw transfer]




VDX_A_3(2ZLC)
VDR_RAT
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




5YI_A_3(3VT6)
VDR_RAT
[Raw transfer]




C5D_A_4(3DR1)
VDRA_DANRE
[Raw transfer]




JC1_A_3(2ZXN)
VDR_RAT
[Raw transfer]




YA2_A_3(3WT7)
VDR_RAT
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




NYA_A_3(2ZMH)
VDR_RAT
[Raw transfer]




LHP_A_3(3W5T)
VDR_RAT
[Raw transfer]




0VK_A_3(4G1D)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA7)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA3)
VDRA_DANRE
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




484_A_3(4G20)
VDRA_DANRE
[Raw transfer]




IVM_B_14(4WVD)

[Raw transfer]




TT2_A_3(2ZMI)
VDR_RAT
[Raw transfer]




YA1_A_3(3WT6)
VDR_RAT
[Raw transfer]




31D_B_10(4QE8)
?
[Raw transfer]




YS9_A_3(3WTQ)
VDR_RAT
[Raw transfer]




0VP_A_3(4G1Z)
VDRA_DANRE
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




0U3_A_3(4FHH)
VDRA_DANRE
[Raw transfer]




LOA_A_3(3W5R)
VDR_RAT
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




P1A_E_3(4OZT)
?
[Raw transfer]




3KL_A_3(3W5Q)
VDR_RAT
[Raw transfer]




YI2_A_3(3VT5)
VDR_RAT
[Raw transfer]




O11_A_3(3W0I)
VDR_RAT
[Raw transfer]




BIV_C_3(2HCD)
VDRA_DANRE
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




YA1_A_3(3WT5)
VDR_RAT
[Raw transfer]




4OA_A_3(3W5P)
VDR_RAT
[Raw transfer]




VD1_A_3(1RKG)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA1)
VDRA_DANRE
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




YS2_A_3(3VRT)
VDR_RAT
[Raw transfer]




P1A_G_8(4UMM)
?
[Raw transfer]




G72_A_3(3O1D)
VDRA_DANRE
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




TKA_A_3(3VTB)
VDR_RAT
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




MI4_A_3(2ZMJ)
VDR_RAT
[Raw transfer]




VDX_A_3(3VT3)
VDR_RAT
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




HWG_C_3(1R20)

[Raw transfer]




P1A_C_3(1R1K)

[Raw transfer]




20E_D_5(2R40)

[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




P1A_G_7(1Z5X)
?
[Raw transfer]




20E_D_5(2R40)

[Raw transfer]




61X_A_5(3KFC)
NR1H2_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




SRL_B_4(3HVL)
NR1I2_HUMAN
[Raw transfer]




40U_B_6(4S0T)
NR1I2_HUMAN
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




SRL_A_5(1NRL)
NR1I2_HUMAN
[Raw transfer]




834_D_4(3IXP)
?
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




40U_A_3(4XHD)
NR1I2_HUMAN
[Raw transfer]




40U_A_5(4S0T)
NR1I2_HUMAN
[Raw transfer]




444_A_2(1UPV)
NR1H2_HUMAN
[Raw transfer]




444_E_5(2O9I)
NR1I2_HUMAN
[Raw transfer]




444_F_6(2O9I)
NR1I2_HUMAN
[Raw transfer]




SRL_B_6(1NRL)
NR1I2_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




SRL_A_2(1ILH)
NR1I2_HUMAN
[Raw transfer]




444_E_5(1PQC)
NR1H2_HUMAN
[Raw transfer]




CDZ_A_2(2QNV)
NR1I2_HUMAN
[Raw transfer]




444_A_2(1UPW)
NR1H2_HUMAN
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




RFP_B_2(1SKX)
NR1I2_HUMAN
[Raw transfer]




PNU_A_2(3R8D)
NR1I2_HUMAN
[Raw transfer]




3WF_A_2(4X1F)
?
[Raw transfer]




3WF_A_2(4X1G)
?
[Raw transfer]




20 PsiBlast_PDB 93.7099%-126 - C3 -3OOK 12.1 NR1H4_HUMAN
24 PsiBlast_CBE 93.3799%-127 - C3 -3OOF 11.7
26 PsiBlast_CBE 92.9299%-128 - C3 -3OMK 11.7
16 PsiBlast_PDB 92.9099%-123 - C3 -3OLF 11.7 NR1H4_HUMAN
15 PsiBlast_PDB 92.6199%-123 - C3 -3OKI 10.8 NR1H4_HUMAN
23 PsiBlast_CBE 92.5799%-126 - C3 -3OOK 12.0
18 PsiBlast_PDB 92.5699%-125 - C3 -3OMM 11.6 NR1H4_HUMAN
17 PsiBlast_PDB 92.3299%-124 - C3 -3OMK 11.7 NR1H4_HUMAN
27 PsiBlast_CBE 92.2499%-125 - C3 -3OLF 11.9
19 PsiBlast_PDB 92.2499%-123 - C3 -3OOF 11.7 NR1H4_HUMAN
25 PsiBlast_CBE 92.0399%-125 - C3 -3OMM 11.9
28 PsiBlast_CBE 91.5699%-124 - C3 -3OKI 10.5
9 PsiBlast_PDB 91.38100%-123 - C3 -4QE6 9.4 ?
21 PsiBlast_CBE 91.32100%-124 - C3 -3BEJ 9.9
12 PsiBlast_PDB 91.21100%-130 - C3 -3L1B 10.6
11 PsiBlast_PDB 91.13100%-133 - C3 -1OSH 11.0
8 PsiBlast_PDB 91.05100%-122 - C3 -3RUU 12.2
4 PsiBlast_PDB 91.05100%-126 - C3 -3HC5 11.8
2 PsiBlast_PDB 90.95100%-122 - C3 -3DCT 11.3
3 PsiBlast_PDB 90.84100%-121 - C3 -3DCU 11.4
7 PsiBlast_PDB 90.67100%-117 - C3 -3RUT 11.6
6 PsiBlast_PDB 90.6099%-131 - C3 -3FLI 9.6
1 PsiBlast_PDB 90.59100%-125 - C3 -3BEJ 10.0 NR1H4_HUMAN
14 PsiBlast_PDB 90.4899%-128 - C3 -3OKH 10.5
32 PsiBlast_CBE 89.5999%-121 - C3 -3GD2 11.9
5 PsiBlast_PDB 89.55100%-122 - C3 -3RVF 10.8
13 PsiBlast_PDB 89.2699%-131 - C3 -3FXV 11.5
31 PsiBlast_CBE 89.0898%-120 - C3 -3P88 11.3
22 PsiBlast_CBE 88.79100%-122 - C3 -4QE8 4.9 ?
29 PsiBlast_CBE 88.7799%-115 - C3 -3HC6 11.7
35 PsiBlast_CBE 88.5094%-119 - C3 -1OSV 9.9
10 PsiBlast_PDB 88.33100%-124 - C3 -4QE8 5.7 ?
36 PsiBlast_CBE 87.8894%-123 - C3 -1OSV 9.3 NR1H4_RAT
34 PsiBlast_CBE 87.1399%-129 - C3 -4OIV 8.8 NR1H4_HUMAN
37 PsiBlast_CBE 86.9994%-117 - C3 -1OT7 8.6
30 PsiBlast_CBE 86.9799%-124 - C3 -3P89 12.1
38 PsiBlast_CBE 86.8394%-114 - C3 -1OT7 8.8 NR1H4_RAT
33 PsiBlast_CBE 85.4499%-119 - C3 -4OIV 9.2
40 PsiBlast_CBE 80.20100%-114 - C3 -4WVD 8.8 NR1H4_HUMAN
39 PsiBlast_CBE 79.30100%-112 - C3 -4WVD 5.7
110 PsiBlast_CBE 69.3234%-121 - C3 -4G1Z 3.4 VDRA_DANRE
103 PsiBlast_CBE 69.3034%-120 - C3 -4IA7 6.3 VDRA_DANRE
107 PsiBlast_CBE 68.9934%-123 - C3 -4G2H 6.3 VDRA_DANRE
114 PsiBlast_CBE 68.9834%-124 - C3 -4FHH 4.6 VDRA_DANRE
112 PsiBlast_CBE 68.8734%-125 - C3 -4G1D 2.8 VDRA_DANRE
109 PsiBlast_CBE 68.7834%-119 - C3 -4G20 3.0 VDRA_DANRE
113 PsiBlast_CBE 68.6634%-121 - C3 -4FHI 6.0 VDRA_DANRE
173 PsiBlast_CBE 68.6534%-141 - C3 -2R40 6.9
101 PsiBlast_CBE 68.6434%-122 - C3 -2HC4 2.2 VDRA_DANRE
106 PsiBlast_CBE 68.5334%-120 - C3 -4IA1 3.1 VDRA_DANRE
98 PsiBlast_CBE 68.5134%-123 - C3 -3O1D 4.9 VDRA_DANRE
108 PsiBlast_CBE 68.4434%-119 - C3 -4G21 2.3 VDRA_DANRE
102 PsiBlast_CBE 68.1134%-121 - C3 -2HBH 5.7 VDRA_DANRE
97 PsiBlast_CBE 68.0634%-122 - C3 -3O1E 5.9 VDRA_DANRE
105 PsiBlast_CBE 68.0534%-120 - C3 -4IA2 5.3 VDRA_DANRE
99 PsiBlast_CBE 67.8734%-120 - C3 -3DR1 3.4 VDRA_DANRE
104 PsiBlast_CBE 67.8634%-115 - C3 -4IA3 3.6 VDRA_DANRE
100 PsiBlast_CBE 67.8134%-123 - C3 -2HCD 4.6 VDRA_DANRE
158 PsiBlast_CBE 67.7334%-126 - C3 -3IXP 8.8 ?
111 PsiBlast_CBE 67.6334%-121 - C3 -4G1Y 5.4 VDRA_DANRE
174 PsiBlast_CBE 67.5934%-133 - C3 -1R1K 7.1
91 PsiBlast_CBE 67.4035%-106 - C3 -4OZT 7.7 ?
172 PsiBlast_CBE 67.1134%-133 - C3 -4UMM 7.2 ?
159 PsiBlast_CBE 66.9734%-139 - C3 -1R20 5.6
120 PsiBlast_CBE 66.2133%-120 - C3 -2O4J 4.8 VDR_RAT
122 PsiBlast_CBE 66.1433%-119 - C3 -1RKG 3.5 VDR_RAT
145 PsiBlast_CBE 66.0933%-118 - C3 -2ZXM 5.1 VDR_RAT
124 PsiBlast_CBE 65.9133%-118 - C3 -1RJK 3.8 VDR_RAT
148 PsiBlast_CBE 65.8933%-120 - C3 -2ZMH 4.8 VDR_RAT
54 PsiBlast_CBE 65.6338%-122 - C3 -3IPS 6.0 NR1H3_HUMAN