@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A1_STF1: (2016-04-07 )
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQVRARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

K08_A_5(4N8R)
?
[Raw transfer]




PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




P3A_D_4(1ZDU)

[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




2 PsiBlast_PDB 94.1799%-156 - C2 -4QK4 9.2 STF1_HUMAN
3 PsiBlast_PDB 93.9199%-161 - C2 -1YOW 10.2 STF1_HUMAN
1 PsiBlast_PDB 92.8499%-154 - C2 -4QJR 9.8 STF1_HUMAN
21 PsiBlast_CBE 91.6899%-156 - C2 -1ZDT 11.2 STF1_HUMAN
25 PsiBlast_CBE 87.4260%-151 - C2 -3PLZ 8.2
4 PsiBlast_PDB 85.7893%-150 - C2 -1YP0 10.7 STF1_MOUSE
12 PsiBlast_PDB 84.3059%-153 - C2 -4DOS 7.7
14 PsiBlast_PDB 83.3257%-152 - C2 -1ZH7 - NR5A2_MOUSE -
11 PsiBlast_PDB 83.1660%-156 - C2 -3PLZ 7.6 NR5A2_HUMAN
5 PsiBlast_PDB 82.6459%-150 - C2 -4RWV 9.7
15 PsiBlast_PDB 82.4157%-150 - C2 -1PK5 - NR5A2_MOUSE -
13 PsiBlast_PDB 81.8658%-160 - C2 -4IS8 - NR5A2_HUMAN -
7 PsiBlast_PDB 81.5959%-154 - C2 -1YUC 9.3 NR5A2_HUMAN
22 PsiBlast_CBE 81.4059%-149 - C2 -4ONI 9.0
24 PsiBlast_CBE 81.2759%-155 - C2 -1YUC 10.1
23 PsiBlast_CBE 81.1959%-152 - C2 -4DOR 11.0
6 PsiBlast_PDB 81.0859%-153 - C2 -4ONI 9.6 NR5A2_HUMAN
10 PsiBlast_PDB 78.5060%-158 - C2 -1YOK 9.1
9 PsiBlast_PDB 76.7860%-158 - C2 -1ZDU 10.4
8 PsiBlast_PDB 75.5759%-158 - C2 -4DOR - NR5A2_HUMAN -
63 PsiBlast_CBE 49.4334%-129 - C2 -4N8R Error ?