@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A2_LRH1: (2016-04-07 )
MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

K08_D_6(4N8R)
?
[Raw transfer]




K08_A_5(4N8R)
?
[Raw transfer]




K09_A_5(4N5G)
?
[Raw transfer]




P3A_D_4(1ZDU)

[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




CHD_E_5(1S9Q)
ERR3_MOUSE
[Raw transfer]




21 PsiBlast_CBE 96.4599%-133 - C2 -4DOR 11.4
23 PsiBlast_CBE 95.83100%-134 - C2 -4ONI 11.1
1 PsiBlast_PDB 94.8899%-140 - C2 -1YUC 10.4 NR5A2_HUMAN
24 PsiBlast_CBE 94.5699%-138 - C2 -3PLZ 8.6
3 PsiBlast_PDB 94.47100%-137 - C2 -4ONI 10.7 NR5A2_HUMAN
5 PsiBlast_PDB 93.92100%-143 - C2 -1ZDU 12.1
22 PsiBlast_CBE 92.5399%-137 - C2 -1YUC 11.1
4 PsiBlast_PDB 92.5199%-131 - C2 -4RWV 10.4
6 PsiBlast_PDB 92.4599%-144 - C2 -1YOK 11.6
7 PsiBlast_PDB 92.4199%-142 - C2 -3PLZ 8.1 NR5A2_HUMAN
8 PsiBlast_PDB 92.0099%-138 - C2 -4DOS 9.7
10 PsiBlast_PDB 91.6787%-132 - C2 -1PK5 - NR5A2_MOUSE -
12 PsiBlast_PDB 90.5188%-133 - C2 -1ZH7 - NR5A2_MOUSE -
2 PsiBlast_PDB 89.3699%-141 - C2 -4DOR - NR5A2_HUMAN -
11 PsiBlast_PDB 88.9187%-129 - C2 -3F5C - NR5A2_MOUSE -
9 PsiBlast_PDB 87.7397%-145 - C2 -4IS8 - NR5A2_HUMAN -
15 PsiBlast_PDB 76.1460%-116 - C2 -4QK4 8.9 STF1_HUMAN
14 PsiBlast_PDB 75.3760%-113 - C2 -4QJR 9.3 STF1_HUMAN
13 PsiBlast_PDB 74.4561%-113 - C2 -1YP0 11.3 STF1_MOUSE
26 PsiBlast_CBE 74.2360%-115 - C2 -1ZDT 11.2 STF1_HUMAN
16 PsiBlast_PDB 74.1360%-123 - C2 -1YOW 9.8 STF1_HUMAN
182 PsiBlast_CBE 60.3033%-108 - C2 -1S9Q 4.3 ERR3_MOUSE
35 PsiBlast_CBE 56.9541%-116 - C2 -4N5G Error ?
31 PsiBlast_CBE 53.8941%-115 - C2 -4N8R Error ?
32 PsiBlast_CBE 53.1441%-112 - C2 -4N8R Error ?