@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1B2_RARb: (2016-11-24 )
MTTSGHACPVPAVNGHMTHYPATPYPLLFPPVIGGLSLPPLHGLHGHPPPSGCSTPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1NY_A_5(4JYG)
RARB_HUMAN
[Raw transfer]




JYH_B_6(4JYH)
RARB_HUMAN
[Raw transfer]




REA_B_5(3A9E)
RARA_HUMAN
[Raw transfer]




1NY_B_7(4JYG)
RARB_HUMAN
[Raw transfer]




REA_L_12(1XDK)
RARB_MOUSE
[Raw transfer]




TTB_A_5(4DM6)
RARB_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




TTB_B_6(4DM6)
RARB_HUMAN
[Raw transfer]




JYH_A_5(4JYH)
RARB_HUMAN
[Raw transfer]




REA_J_10(1XDK)
RARB_MOUSE
[Raw transfer]




184_A_2(1FCX)
RARG_HUMAN
[Raw transfer]




394_A_2(1EXA)
RARG_HUMAN
[Raw transfer]




TTB_B_2(1XAP)
RARB_HUMAN
[Raw transfer]




REA_B_2(3LBD)
RARG_HUMAN
[Raw transfer]




JYI_A_5(4JYI)
RARB_HUMAN
[Raw transfer]




REA_B_6(4DM8)
RARB_HUMAN
[Raw transfer]




REA_A_5(4DM8)
RARB_HUMAN
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




254_A_2(1FD0)
RARG_HUMAN
[Raw transfer]




JYI_B_6(4JYI)
RARB_HUMAN
[Raw transfer]




EQN_A_3(3KMR)
RARA_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




156_A_2(1FCZ)
RARG_HUMAN
[Raw transfer]




564_A_2(1FCY)
RARG_HUMAN
[Raw transfer]




961_A_2(1EXX)
RARG_HUMAN
[Raw transfer]




BMS_C_3(1DKF)
RARA_HUMAN
[Raw transfer]




EQO_B_5(3KMZ)
RARA_HUMAN
[Raw transfer]




EQO_A_10(3KMZ)
RARA_HUMAN
[Raw transfer]




961_B_2(4LBD)
RARG_HUMAN
[Raw transfer]




LUF_C_6(4DQM)
RARA_HUMAN
[Raw transfer]




6Q7_A_2(5K13)
RARA_HUMAN
[Raw transfer]




LUF_A_5(4DQM)
RARA_HUMAN
[Raw transfer]




23 PsiBlast_CBE 86.55100%-133 - C4 -4DM6 10.2 RARB_HUMAN
24 PsiBlast_CBE 85.2199%-135 - C4 -4JYI 11.8 RARB_HUMAN
7 PsiBlast_PDB 85.1899%-137 - C4 -4JYI 11.4 RARB_HUMAN
25 PsiBlast_CBE 84.7499%-138 - C4 -4JYH 10.3 RARB_HUMAN
22 PsiBlast_CBE 84.66100%-129 - C4 -4DM8 8.5 RARB_HUMAN
26 PsiBlast_CBE 84.3399%-129 - C4 -4JYG 11.2 RARB_HUMAN
6 PsiBlast_PDB 84.2199%-141 - C4 -4JYH 10.2 RARB_HUMAN
3 PsiBlast_PDB 83.66100%-130 - C4 -4DM6 10.2 RARB_HUMAN
5 PsiBlast_PDB 83.1099%-142 - C4 -4JYG 11.1 RARB_HUMAN
4 PsiBlast_PDB 83.06100%-131 - C4 -4DM8 8.5 RARB_HUMAN
12 PsiBlast_PDB 82.8788%-141 - C4 -1DKF 10.6 RARA_HUMAN
18 PsiBlast_PDB 82.7986%-132 - C4 -4LBD 10.8 RARG_HUMAN
8 PsiBlast_PDB 82.7187%-131 - C4 -3A9E 8.2 RARA_HUMAN
60 HHSearch 82.4799%-124 - C4 -1XDK 8.8 RARB_MOUSE
1 PsiBlast_PDB 82.2698%-124 - C4 -1XDK 8.8 RARB_MOUSE
21 PsiBlast_CBE 81.6698%-125 - C4 -1XDK 8.8 RARB_MOUSE
11 PsiBlast_PDB 81.4786%-134 - C4 -5K13 11.4 RARA_HUMAN
15 PsiBlast_PDB 81.4486%-135 - C4 -1EXX 9.3 RARG_HUMAN
2 PsiBlast_PDB 81.39100%-133 - C4 -1XAP 10.2 RARB_HUMAN
17 PsiBlast_PDB 81.2386%-125 - C4 -3LBD 8.7 RARG_HUMAN
67 HHSearch 80.9089%-142 - C4 -1FCY 10.7 RARG_HUMAN
19 PsiBlast_PDB 80.5488%-141 - C4 -1FCY 10.7 RARG_HUMAN
20 PsiBlast_PDB 80.5388%-139 - C4 -1FCX 10.6 RARG_HUMAN
63 HHSearch 80.3788%-131 - C4 -3KMR 9.8 RARA_HUMAN
29 PsiBlast_CBE 80.3188%-138 - C4 -1FD0 10.4 RARG_HUMAN
28 PsiBlast_CBE 80.2888%-138 - C4 -4DQM 5.8 RARA_HUMAN
14 PsiBlast_PDB 80.2186%-134 - C4 -1EXA 9.7 RARG_HUMAN
9 PsiBlast_PDB 80.1787%-131 - C4 -3KMR 9.8 RARA_HUMAN
30 PsiBlast_CBE 79.9488%-138 - C4 -1FCZ 10.0 RARG_HUMAN
13 PsiBlast_PDB 79.6188%-133 - C4 -4DQM 5.6 RARA_HUMAN
10 PsiBlast_PDB 77.3987%-127 - C4 -3KMZ 11.5 RARA_HUMAN
27 PsiBlast_CBE 76.2087%-128 - C4 -3KMZ 11.3 RARA_HUMAN