@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1F2_RORb: (2016-11-24 )
MCENQLKTKADATAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNNETSGTYANGHVIDLPKSEGYYNVDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPEIVNTLFPPLYKELFNPDCATGCK

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]




REA_C_3(1N4H)
RORB_RAT
[Raw transfer]




ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]




4D8_B_7(4S15)

[Raw transfer]




C3S_B_2(1S0X)

[Raw transfer]




4D8_A_5(4S15)
RORA_HUMAN
[Raw transfer]




4D8_A_3(4S14)

[Raw transfer]




STE_C_3(1K4W)
RORB_RAT
[Raw transfer]




NBH_A_5(4NIE)
RORG_HUMAN
[Raw transfer]




HC3_A_5(3L0L)
RORG_HUMAN
[Raw transfer]




39K_A_3(4QM0)
RORG_HUMAN
[Raw transfer]




3QQ_A_5(4WLB)
RORG_HUMAN
[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




3SX_A_4(4WQP)
RORG_HUMAN
[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




4LQ_A_3(5AYG)
RORG_HUMAN
[Raw transfer]




3SN_A_5(4WPF)
RORG_HUMAN
[Raw transfer]




76E_A_3(5APJ)

[Raw transfer]




VYI_A_3(5APH)
RORG_HUMAN
[Raw transfer]




VYI_A_3(5APH)
RORG_HUMAN
[Raw transfer]




6F1_A_9(5IZ0)

[Raw transfer]




444_A_3(4NB6)
RORG_HUMAN
[Raw transfer]




444_A_5(5EJV)

[Raw transfer]




3 PsiBlast_PDB 95.7598%-161 - C1 -1NQ7 8.1 RORB_RAT
1 PsiBlast_PDB 94.5298%-157 - C1 -1N4H 7.3 RORB_RAT
2 PsiBlast_PDB 93.3598%-160 - C1 -1K4W 6.0 RORB_RAT
4 PsiBlast_PDB 83.7261%-167 - C1 -4S15 8.4 RORA_HUMAN
6 PsiBlast_PDB 82.8661%-165 - C1 -1S0X 9.4
5 PsiBlast_PDB 82.8261%-166 - C1 -1N83 8.1
21 PsiBlast_CBE 81.5561%-158 - C1 -4S15 8.2
60 HHSearch 79.5098% -93 - C1 -1NQ7 8.1 RORB_RAT
19 PsiBlast_PDB 79.3150%-164 - C1 -5APH 5.5 RORG_HUMAN
11 PsiBlast_PDB 79.0750%-162 - C1 -4WLB 6.1 RORG_HUMAN
20 PsiBlast_PDB 78.2850%-163 - C1 -5APJ 4.9
12 PsiBlast_PDB 74.5250%-161 - C1 -4WQP 8.0 RORG_HUMAN
59 HHSearch 66.2460% -39 - C1 -1N83 8.2