@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H2_LXRb: (2016-11-25 )
MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

67S_A_5(5I4V)
NCOA2_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




6OX_D_9(5JY3)
?
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




668_D_8(5HJP)
NR1H2_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




668_B_5(5HJP)
NR1H2_HUMAN
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




668_B_6(5HJS)
NR1H3_HUMAN
[Raw transfer]




668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]




668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




6OX_B_6(5JY3)
?
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
NR1H3_HUMAN
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




6OX_A_5(5JY3)
?
[Raw transfer]




6OX_C_8(5JY3)
?
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
NR1H3_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
NR1H3_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]




IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]




13 PsiBlast_PDB 79.2397%-132 - C5 -3L0E 10.3 NR1H2_HUMAN
31 PsiBlast_CBE 79.08100%-128 - C5 -1PQ6 12.6 NR1H2_HUMAN
12 PsiBlast_PDB 78.8397%-128 - C5 -5I4V 9.2 NCOA2_HUMAN (first)
4 PsiBlast_PDB 78.30100%-136 - C5 -1PQ6 2.1 NR1H2_HUMAN
14 PsiBlast_PDB 77.5698%-137 - C5 -5HJP 10.3 NR1H2_HUMAN
37 PsiBlast_CBE 77.1098%-131 - C5 -4DK8 8.4 NR1H2_HUMAN
38 PsiBlast_CBE 76.9698%-130 - C5 -5HJP 10.1 NR1H2_HUMAN
30 PsiBlast_CBE 76.87100%-149 - C5 -1PQ6 11.9 NR1H2_HUMAN
36 PsiBlast_CBE 76.7699%-119 - C5 -1P8D 9.2 NR1H2_HUMAN
23 PsiBlast_CBE 76.76100%-127 - C5 -3KFC 10.4 NR1H2_HUMAN
11 PsiBlast_PDB 76.6598%-128 - C5 -4DK8 8.8 NR1H2_HUMAN
25 PsiBlast_CBE 76.62100%-127 - C5 -1PQC 8.0 NR1H2_HUMAN
15 PsiBlast_PDB 76.6196%-132 - C5 -4DK7 6.7 NR1H2_HUMAN
10 PsiBlast_PDB 76.4699%-121 - C5 -1P8D 9.1 NR1H2_HUMAN
28 PsiBlast_CBE 76.42100%-121 - C5 -1PQ9 5.8 NR1H2_HUMAN
22 PsiBlast_CBE 76.25100%-128 - C5 -3KFC 9.4 NR1H2_HUMAN
35 PsiBlast_CBE 75.7097%-130 - C5 -4RAK 12.0 NR1H2_HUMAN
29 PsiBlast_CBE 75.69100%-123 - C5 -1PQ9 5.9 NR1H2_HUMAN
32 PsiBlast_CBE 75.5097%-130 - C5 -5JY3 11.5 ?
26 PsiBlast_CBE 75.43100%-121 - C5 -1PQC 8.4 NR1H2_HUMAN
17 PsiBlast_PDB 75.1677%-132 - C5 -3FC6 13.3 NR1H3_MOUSE
34 PsiBlast_CBE 74.5697%-131 - C5 -5JY3 11.4 ?
44 PsiBlast_CBE 74.1676%-144 - C5 -5HJS 10.2 NR1H3_HUMAN
42 PsiBlast_CBE 74.0077%-124 - C5 -3FC6 13.1 NR1H3_MOUSE
45 PsiBlast_CBE 73.8976%-145 - C5 -5HJS 9.9 NR1H3_HUMAN
68 HHSearch 73.7477%-145 - C5 -5HJS 9.9 NR1H3_HUMAN
24 PsiBlast_CBE 73.45100%-150 - C5 -1PQC 3.4 NR1H2_HUMAN
27 PsiBlast_CBE 73.01100%-152 - C5 -1PQ9 6.0 NR1H2_HUMAN
43 PsiBlast_CBE 72.7877%-130 - C5 -3FAL 10.0 NR1H3_MOUSE
47 PsiBlast_CBE 72.7176%-141 - C5 -5AVI 9.7 NR1H3_HUMAN
19 PsiBlast_PDB 72.5476%-140 - C5 -3IPQ 12.6 NR1H3_HUMAN
18 PsiBlast_PDB 72.5377%-132 - C5 -3FAL 9.7 NR1H3_MOUSE
51 PsiBlast_CBE 72.4876%-142 - C5 -3IPS 8.6 NR1H3_HUMAN
20 PsiBlast_PDB 72.3076%-144 - C5 -3IPS 9.7 NR1H3_HUMAN
49 PsiBlast_CBE 72.2276%-129 - C5 -3IPU 8.9 NR1H3_HUMAN
8 PsiBlast_PDB 72.1897%-118 - C5 -4RAK 2.4 NR1H2_HUMAN
50 PsiBlast_CBE 71.8776%-130 - C5 -3IPU 9.0 NR1H3_HUMAN
48 PsiBlast_CBE 71.8676%-142 - C5 -5AVI 9.5 NR1H3_HUMAN
46 PsiBlast_CBE 71.5376%-148 - C5 -5AVL 11.1 NR1H3_HUMAN
9 PsiBlast_PDB 71.1697%-127 - C5 -5JY3 10.5 ?
33 PsiBlast_CBE 67.6197%-126 - C5 -5JY3 11.2 ?
52 PsiBlast_CBE 62.9878%-136 - C5 -1UHL 5.9 NR1H3_HUMAN