@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H3_LXRa: (2016-11-25 )
MSLWLGAPVPDIPPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVGLEAAEPTALLTRAEPPSEPTEIRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
NR1H3_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
NR1H3_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




965_A_5(1PQ6)
NR1H2_HUMAN
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
NR1H3_HUMAN
[Raw transfer]




61X_A_5(3KFC)
NR1H2_HUMAN
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]




668_A_5(5HJS)
NR1H3_HUMAN
[Raw transfer]




67S_A_5(5I4V)
NCOA2_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




668_B_6(5HJS)
NR1H3_HUMAN
[Raw transfer]




668_B_5(5HJP)
NR1H2_HUMAN
[Raw transfer]




668_D_8(5HJP)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPW)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPV)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




652_A_5(4RAK)
NR1H2_HUMAN
[Raw transfer]




6OX_D_9(5JY3)
?
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




44B_F_6(1PQ9)
NR1H2_HUMAN
[Raw transfer]




6OX_B_6(5JY3)
?
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




6OX_C_8(5JY3)
?
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




6OX_A_5(5JY3)
?
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




67 HHSearch 77.08100%-152 - C4 -5HJS 10.0 NR1H3_HUMAN
6 PsiBlast_PDB 77.08100%-152 - C4 -5HJS 10.0 NR1H3_HUMAN
22 PsiBlast_CBE 76.80100%-145 - C4 -5AVI 9.5 NR1H3_HUMAN
21 PsiBlast_CBE 76.73100%-151 - C4 -5HJS 10.2 NR1H3_HUMAN
4 PsiBlast_PDB 76.43100%-145 - C4 -5AVI 9.5 NR1H3_HUMAN
24 PsiBlast_CBE 76.30100%-148 - C4 -3IPS 8.5 NR1H3_HUMAN
5 PsiBlast_PDB 75.55100%-150 - C4 -5AVL 11.1 NR1H3_HUMAN
23 PsiBlast_CBE 75.12100%-134 - C4 -3IPU 8.9 NR1H3_HUMAN
9 PsiBlast_PDB 75.1295%-137 - C4 -3FC6 13.3 NR1H3_MOUSE
3 PsiBlast_PDB 75.10100%-133 - C4 -3IPU 8.8 NR1H3_HUMAN
27 PsiBlast_CBE 75.0895%-131 - C4 -3FAL 10.0 NR1H3_MOUSE
10 PsiBlast_PDB 75.0695%-132 - C4 -3FAL 9.7 NR1H3_MOUSE
2 PsiBlast_PDB 75.04100%-148 - C4 -3IPS 9.6 NR1H3_HUMAN
26 PsiBlast_CBE 74.9395%-129 - C4 -3FC6 13.1 NR1H3_MOUSE
1 PsiBlast_PDB 74.44100%-146 - C4 -3IPQ 12.6 NR1H3_HUMAN
51 PsiBlast_CBE 71.2476%-129 - C4 -5I4V 9.2 NCOA2_HUMAN (first)
50 PsiBlast_CBE 71.2376%-140 - C4 -5HJP 10.2 NR1H2_HUMAN
31 PsiBlast_CBE 70.8976%-123 - C4 -1P8D 9.2 NR1H2_HUMAN
48 PsiBlast_CBE 70.5275%-133 - C4 -3L0E 10.3 NR1H2_HUMAN
8 PsiBlast_PDB 70.2599%-137 - C4 -1UHL 5.9 NR1H3_HUMAN
45 PsiBlast_CBE 70.2476%-130 - C4 -1PQ6 12.6 NR1H2_HUMAN
41 PsiBlast_CBE 70.2276%-152 - C4 -1PQ9 6.0 NR1H2_HUMAN
18 PsiBlast_PDB 70.1376%-134 - C4 -1PQ9 5.9 NR1H2_HUMAN
17 PsiBlast_PDB 70.0376%-139 - C4 -1PQ6 11.7 NR1H2_HUMAN
38 PsiBlast_CBE 70.0076%-151 - C4 -1PQC 3.4 NR1H2_HUMAN
12 PsiBlast_PDB 69.8876%-126 - C4 -1P8D 9.1 NR1H2_HUMAN
19 PsiBlast_PDB 69.6176%-133 - C4 -1PQC 7.8 NR1H2_HUMAN
44 PsiBlast_CBE 69.5076%-151 - C4 -1PQ6 11.9 NR1H2_HUMAN
49 PsiBlast_CBE 69.4876%-133 - C4 -5HJP 10.0 NR1H2_HUMAN
35 PsiBlast_CBE 69.4676%-133 - C4 -4RAK 12.0 NR1H2_HUMAN
37 PsiBlast_CBE 69.4576%-130 - C4 -3KFC 10.4 NR1H2_HUMAN
20 PsiBlast_PDB 69.3576%-130 - C4 -3KFC 10.3 NR1H2_HUMAN
34 PsiBlast_CBE 69.3276%-134 - C4 -5JY3 11.4 ?
43 PsiBlast_CBE 69.1676%-125 - C4 -1PQ9 5.9 NR1H2_HUMAN
40 PsiBlast_CBE 69.0276%-123 - C4 -1PQC 8.4 NR1H2_HUMAN
36 PsiBlast_CBE 68.5876%-129 - C4 -3KFC 9.4 NR1H2_HUMAN
47 PsiBlast_CBE 68.5676%-130 - C4 -4DK8 8.8 NR1H2_HUMAN
15 PsiBlast_PDB 68.5676%-136 - C4 -1UPV 6.3 NR1H2_HUMAN
39 PsiBlast_CBE 68.5576%-130 - C4 -1PQC 8.0 NR1H2_HUMAN
32 PsiBlast_CBE 68.1776%-131 - C4 -5JY3 11.4 ?
16 PsiBlast_PDB 67.8676%-128 - C4 -1UPW 5.9 NR1H2_HUMAN
46 PsiBlast_CBE 67.8576%-136 - C4 -4DK8 8.4 NR1H2_HUMAN
42 PsiBlast_CBE 67.8276%-125 - C4 -1PQ9 5.8 NR1H2_HUMAN
14 PsiBlast_PDB 66.2176%-130 - C4 -5JY3 10.4 ?
33 PsiBlast_CBE 65.5676%-127 - C4 -5JY3 11.2 ?
13 PsiBlast_PDB 65.3576%-120 - C4 -4RAK 10.1 NR1H2_HUMAN