@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H4_FXR: (2016-11-25 )
MVMQFQGLENPIQISPHCSCTPSGFFMEMMSMKPAKGVLTEQVAGPLGQNLEVEPYSQYSNVQFPQVQPQISSSSYYSNLGFYPQQPEEWYSPGIYELRRMPAETLYQGETEVAEMPVTKKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OOK_C_6(3OOK)

[Raw transfer]




OLF_C_6(3OLF)

[Raw transfer]




OOF_A_5(3OOF)
NR1H4_HUMAN
[Raw transfer]




OOF_C_6(3OOF)

[Raw transfer]




OLF_A_5(3OLF)
NR1H4_HUMAN
[Raw transfer]




OMM_C_6(3OMM)

[Raw transfer]




OOK_A_5(3OOK)
NR1H4_HUMAN
[Raw transfer]




OMM_A_5(3OMM)
NR1H4_HUMAN
[Raw transfer]




OMK_A_5(3OMK)
NR1H4_HUMAN
[Raw transfer]




OMK_C_6(3OMK)

[Raw transfer]




OKI_A_5(3OKI)
NR1H4_HUMAN
[Raw transfer]




OKI_C_6(3OKI)

[Raw transfer]




O62_A_3(3DCU)

[Raw transfer]




59G_A_5(3RUT)

[Raw transfer]




088_A_3(3HC6)

[Raw transfer]




P88_A_3(3P88)

[Raw transfer]




37G_A_5(3RUU)

[Raw transfer]




89P_A_3(3P89)

[Raw transfer]




33Y_A_2(3FLI)

[Raw transfer]




82X_A_3(3HC5)

[Raw transfer]




OKH_A_4(3OKH)

[Raw transfer]




064_A_3(3DCT)

[Raw transfer]




MUF_B_8(3BEJ)

[Raw transfer]




31D_A_5(4QE8)
NR1H4_HUMAN
[Raw transfer]




MUF_A_7(3BEJ)
NR1H4_HUMAN
[Raw transfer]




635_A_2(3L1B)

[Raw transfer]




CHC_G_7(1OT7)
NR1H4_RAT
[Raw transfer]




034_A_4(3RVF)

[Raw transfer]




IU5_F_6(1OT7)

[Raw transfer]




JN3_A_3(4QE6)

[Raw transfer]




JN3_A_3(4QE6)

[Raw transfer]




708_A_3(3GD2)

[Raw transfer]




643_A_3(3FXV)

[Raw transfer]




IVM_A_9(4WVD)
NR1H4_HUMAN
[Raw transfer]




XX9_B_4(4OIV)

[Raw transfer]




CHC_F_6(1OSV)

[Raw transfer]




CHC_G_7(1OSV)
NR1H4_RAT
[Raw transfer]




XX9_A_3(4OIV)
NR1H4_HUMAN
[Raw transfer]




FEX_B_2(1OSH)

[Raw transfer]




IVM_B_14(4WVD)

[Raw transfer]




31D_B_10(4QE8)

[Raw transfer]




OKH_A_3(3OKH)

[Raw transfer]




26 PsiBlast_CBE 94.1799%-154 - C4 -3OMK 11.7
20 PsiBlast_PDB 94.1799%-147 - C4 -3OOK 12.1 NR1H4_HUMAN
24 PsiBlast_CBE 94.0099%-149 - C4 -3OOF 11.7
18 PsiBlast_PDB 93.3399%-147 - C4 -3OMM 11.6 NR1H4_HUMAN
16 PsiBlast_PDB 93.3199%-142 - C4 -3OLF 11.7 NR1H4_HUMAN
23 PsiBlast_CBE 93.0699%-146 - C4 -3OOK 12.1
17 PsiBlast_PDB 93.0299%-146 - C4 -3OMK 11.7 NR1H4_HUMAN
27 PsiBlast_CBE 92.9199%-147 - C4 -3OLF 11.9
15 PsiBlast_PDB 92.8699%-142 - C4 -3OKI 10.8 NR1H4_HUMAN
19 PsiBlast_PDB 92.4899%-142 - C4 -3OOF 11.7 NR1H4_HUMAN
25 PsiBlast_CBE 92.4699%-143 - C4 -3OMM 11.9
28 PsiBlast_CBE 92.0199%-144 - C4 -3OKI 10.5
14 PsiBlast_PDB 91.4499%-150 - C4 -3OKH 10.5
48 HHSearch 91.28100%-139 - C4 -4QE6 9.3
21 PsiBlast_CBE 91.19100%-139 - C4 -3BEJ 9.9
9 PsiBlast_PDB 90.99100%-141 - C4 -4QE6 9.3
8 PsiBlast_PDB 90.71100%-136 - C4 -3RUU 12.2
4 PsiBlast_PDB 90.67100%-140 - C4 -3HC5 11.8
3 PsiBlast_PDB 90.58100%-136 - C4 -3DCU 11.4
1 PsiBlast_PDB 90.52100%-144 - C4 -3BEJ 10.0 NR1H4_HUMAN
2 PsiBlast_PDB 90.48100%-136 - C4 -3DCT 11.3
7 PsiBlast_PDB 90.31100%-127 - C4 -3RUT 11.6
6 PsiBlast_PDB 90.2599%-155 - C4 -3FLI 9.6
5 PsiBlast_PDB 89.81100%-135 - C4 -3RVF 10.8
35 PsiBlast_CBE 89.2994%-140 - C4 -1OSV 9.9
31 PsiBlast_CBE 88.8198%-131 - C4 -3P88 11.3
32 PsiBlast_CBE 88.7799%-132 - C4 -3GD2 11.9
13 PsiBlast_PDB 88.7799%-158 - C4 -3FXV 11.5
11 PsiBlast_PDB 88.61100%-158 - C4 -1OSH 11.1
36 PsiBlast_CBE 88.6094%-143 - C4 -1OSV 9.3 NR1H4_RAT
12 PsiBlast_PDB 88.55100%-150 - C4 -3L1B 10.6
29 PsiBlast_CBE 88.1399%-125 - C4 -3HC6 11.7
10 PsiBlast_PDB 87.84100%-140 - C4 -4QE8 5.5 NR1H4_HUMAN
22 PsiBlast_CBE 87.43100%-137 - C4 -4QE8 4.9
37 PsiBlast_CBE 87.3694%-137 - C4 -1OT7 8.6
38 PsiBlast_CBE 86.8694%-130 - C4 -1OT7 8.8 NR1H4_RAT
30 PsiBlast_CBE 86.8099%-134 - C4 -3P89 12.2
34 PsiBlast_CBE 85.4399%-153 - C4 -4OIV 8.8 NR1H4_HUMAN
33 PsiBlast_CBE 85.0599%-138 - C4 -4OIV 9.2
39 PsiBlast_CBE 80.91100%-130 - C4 -4WVD 5.4
40 PsiBlast_CBE 80.06100%-128 - C4 -4WVD 8.8 NR1H4_HUMAN