@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1I1_VDR: (2016-11-25 )
MEAMAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSHPSRPNSRHTPSFSGDSSSSCSDHCITSSDMMDSSSFSNLDLSEEDSDDPSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFGNEIS

Atome Classification :

(82 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




2KB_A_2(5GT4)
?
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




41W_A_2(3X36)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




BIV_C_3(2HCD)
VDRA_DANRE
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




YW2_A_3(4YNK)
VDR_RAT
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




41V_A_2(3X31)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA7)
VDRA_DANRE
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA1)
VDRA_DANRE
[Raw transfer]




VDX_A_3(4RUJ)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA3)
VDRA_DANRE
[Raw transfer]




XE4_C_3(2HBH)
VDRA_DANRE
[Raw transfer]




BIV_X_3(4RUO)
VDRA_DANRE
[Raw transfer]




0VO_A_3(4G1Y)
VDRA_DANRE
[Raw transfer]




0VK_A_3(4G1D)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G1Z)
VDRA_DANRE
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




0VP_A_3(4G21)
VDRA_DANRE
[Raw transfer]




484_A_3(4G20)
VDRA_DANRE
[Raw transfer]




0S4_A_3(4FHI)
VDRA_DANRE
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




0VQ_A_3(4G2H)
VDRA_DANRE
[Raw transfer]




0U3_A_3(4FHH)
VDRA_DANRE
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




H97_A_3(4RUP)
VDRA_DANRE
[Raw transfer]




6VH_A_3(5LGA)
?
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




H97_A_3(3O1E)
VDRA_DANRE
[Raw transfer]




C5D_A_4(3DR1)
VDRA_DANRE
[Raw transfer]




G72_A_3(3O1D)
VDRA_DANRE
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




M7E_A_3(5E7V)
VDRA_DANRE
[Raw transfer]




18 PsiBlast_PDB 85.5683%-118 - C3 -3A3Z 11.8 VDR_HUMAN
7 PsiBlast_PDB 85.0883%-123 - C3 -4G2I 11.8 VDR_HUMAN
9 PsiBlast_PDB 84.8883%-124 - C3 -1S19 10.8 VDR_HUMAN
20 PsiBlast_PDB 84.6283%-117 - C3 -3A78 10.8 VDR_HUMAN
19 PsiBlast_PDB 84.6183%-117 - C3 -3A40 11.8 VDR_HUMAN
17 PsiBlast_PDB 84.6083%-115 - C3 -3CS6 11.3 VDR_HUMAN
6 PsiBlast_PDB 84.5983%-117 - C3 -3TKC 11.7 ?
10 PsiBlast_PDB 84.5883%-122 - C3 -1TXI 10.4 VDR_HUMAN
8 PsiBlast_PDB 84.3983%-121 - C3 -1S0Z 11.4 VDR_HUMAN
4 PsiBlast_PDB 84.3883%-116 - C3 -3OGT 11.6 VDR_HUMAN
5 PsiBlast_PDB 84.2783%-121 - C3 -3KPZ 10.6 VDR_HUMAN
33 PsiBlast_CBE 84.2083%-122 - C3 -5GT4 11.8 ?
30 PsiBlast_CBE 84.0583%-116 - C3 -3P8X 11.3 VDR_HUMAN
15 PsiBlast_PDB 84.0583%-118 - C3 -2HB8 11.5 VDR_HUMAN
3 PsiBlast_PDB 84.0483%-115 - C3 -1IE9 11.2 VDR_HUMAN
14 PsiBlast_PDB 84.0383%-117 - C3 -2HB7 12.4 VDR_HUMAN
42 PsiBlast_CBE 83.5782%-118 - C3 -3M7R 9.5 VDR_HUMAN
34 PsiBlast_CBE 83.5182%-122 - C3 -3B0T 11.1 VDR_HUMAN
16 PsiBlast_PDB 83.3783%-115 - C3 -3CS4 11.6 VDR_HUMAN
29 PsiBlast_CBE 83.3083%-123 - C3 -3AUQ 11.2 VDR_HUMAN
31 PsiBlast_CBE 83.0883%-123 - C3 -3A2I 10.6 VDR_HUMAN
24 PsiBlast_CBE 82.9083%-129 - C3 -3X31 10.4 VDR_HUMAN
25 PsiBlast_CBE 82.7983%-123 - C3 -3WWR 12.1 VDR_HUMAN
32 PsiBlast_CBE 82.7682%-123 - C3 -3A2J 10.5 VDR_HUMAN
23 PsiBlast_CBE 82.5783%-120 - C3 -3X36 10.6 VDR_HUMAN
27 PsiBlast_CBE 82.2883%-121 - C3 -3AX8 11.3 VDR_HUMAN
22 PsiBlast_CBE 82.1183%-127 - C3 -4ITE 12.9 VDR_HUMAN
36 PsiBlast_CBE 81.8783%-125 - C3 -3W0Y 13.5 VDR_HUMAN
28 PsiBlast_CBE 81.7083%-121 - C3 -3AUR 11.1 VDR_HUMAN
1 PsiBlast_PDB 81.6783%-124 - C3 -1DB1 10.8 VDR_HUMAN
26 PsiBlast_CBE 81.5783%-114 - C3 -3VHW 13.1 VDR_HUMAN
21 PsiBlast_CBE 81.5583%-120 - C3 -4ITF 13.2 VDR_HUMAN
38 PsiBlast_CBE 81.5183%-126 - C3 -3W0A 12.4 VDR_HUMAN
37 PsiBlast_CBE 81.4483%-126 - C3 -3W0C 12.7 VDR_HUMAN
40 PsiBlast_CBE 81.4183%-126 - C3 -3AZ2 11.3 VDR_HUMAN
41 PsiBlast_CBE 81.2483%-123 - C3 -3AZ1 10.0 VDR_HUMAN
39 PsiBlast_CBE 81.2283%-124 - C3 -3AZ3 12.5 VDR_HUMAN
13 PsiBlast_PDB 80.5883%-119 - C3 -2HAS 12.1 VDR_HUMAN
12 PsiBlast_PDB 80.5583%-122 - C3 -2HAR 12.4 VDR_HUMAN
35 PsiBlast_CBE 80.4983%-121 - C3 -3WGP 12.1 VDR_HUMAN
11 PsiBlast_PDB 80.3583%-118 - C3 -2HAM 12.2 VDR_HUMAN
2 PsiBlast_PDB 80.2583%-119 - C3 -1IE8 11.2 VDR_HUMAN
55 PsiBlast_CBE 78.6275%-130 - C3 -2ZL9 11.7 VDR_RAT
45 PsiBlast_CBE 78.4475%-129 - C3 -1RK3 11.3 VDR_RAT
49 PsiBlast_CBE 78.3075%-135 - C3 -3VRW 11.9 VDR_RAT
50 PsiBlast_CBE 78.0775%-132 - C3 -3VRV 11.4 VDR_RAT
44 PsiBlast_CBE 77.8975%-123 - C3 -2O4J 11.6 VDR_RAT
43 PsiBlast_CBE 77.8375%-120 - C3 -2O4R 11.2 VDR_RAT
48 PsiBlast_CBE 77.6575%-115 - C3 -4YNK 12.5 VDR_RAT
47 PsiBlast_CBE 77.4275%-119 - C3 -3A2H 10.5 VDR_RAT
52 PsiBlast_CBE 77.3875%-126 - C3 -3VJT 8.7 VDR_RAT
51 PsiBlast_CBE 77.2375%-127 - C3 -3VRU 10.2 VDR_RAT
54 PsiBlast_CBE 77.1875%-123 - C3 -2ZLA 11.7 VDR_RAT
46 PsiBlast_CBE 77.0075%-120 - C3 -1RJK 11.5 VDR_RAT
53 PsiBlast_CBE 76.9975%-120 - C3 -3VJS 8.8 VDR_RAT
97 HHSearch 76.63100%-161 - C3 -3B0T 10.2 VDR_HUMAN
96 HHSearch 74.2794%-144 - C3 -2O4J 10.6 VDR_RAT
78 PsiBlast_CBE 70.0668%-135 - C3 -4RUO 12.1 VDRA_DANRE
58 PsiBlast_CBE 69.5468%-135 - C3 -3O1D 12.6 VDRA_DANRE
64 PsiBlast_CBE 69.4568%-135 - C3 -5E7V 11.5 VDRA_DANRE
77 PsiBlast_CBE 69.4268%-134 - C3 -4RUP 12.8 VDRA_DANRE
79 PsiBlast_CBE 69.3468%-130 - C3 -4RUJ 10.6 VDRA_DANRE
67 PsiBlast_CBE 69.3368%-131 - C3 -4IA2 12.4 VDRA_DANRE
73 PsiBlast_CBE 69.3168%-132 - C3 -4G1Y 9.8 VDRA_DANRE
63 PsiBlast_CBE 69.2868%-139 - C3 -5LGA 12.8 ?
75 PsiBlast_CBE 69.1868%-132 - C3 -4FHI 10.2 VDRA_DANRE
66 PsiBlast_CBE 69.1768%-134 - C3 -4IA3 12.4 VDRA_DANRE
76 PsiBlast_CBE 69.1068%-132 - C3 -4FHH 10.0 VDRA_DANRE
60 PsiBlast_CBE 69.0968%-133 - C3 -2HCD 12.5 VDRA_DANRE
61 PsiBlast_CBE 69.0168%-134 - C3 -2HC4 10.9 VDRA_DANRE
56 PsiBlast_CBE 69.0168%-130 - C3 -4Q0A 7.5 VDRA_DANRE
68 PsiBlast_CBE 68.9368%-132 - C3 -4IA1 12.3 VDRA_DANRE
65 PsiBlast_CBE 68.8968%-136 - C3 -4IA7 12.4 VDRA_DANRE
71 PsiBlast_CBE 68.4168%-131 - C3 -4G20 11.1 VDRA_DANRE
72 PsiBlast_CBE 68.1668%-132 - C3 -4G1Z 11.4 VDRA_DANRE
62 PsiBlast_CBE 68.1668%-128 - C3 -2HBH 10.7 VDRA_DANRE
69 PsiBlast_CBE 68.1568%-132 - C3 -4G2H 11.5 VDRA_DANRE
59 PsiBlast_CBE 68.1168%-128 - C3 -3DR1 11.0 VDRA_DANRE
70 PsiBlast_CBE 67.9968%-135 - C3 -4G21 10.8 VDRA_DANRE
74 PsiBlast_CBE 67.8068%-133 - C3 -4G1D 11.1 VDRA_DANRE
57 PsiBlast_CBE 67.7668%-131 - C3 -3O1E 12.3 VDRA_DANRE
99 HHSearch 66.2281%-143 - C3 -4Q0A 7.2 VDRA_DANRE