@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A1_STF1: (2016-11-26 )
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQVRARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




EPH_A_9(4PLE)
NR5A2_HUMAN
[Raw transfer]




EPH_C_13(4PLE)
NR5A2_HUMAN
[Raw transfer]




EPH_G_22(4PLE)

[Raw transfer]




P3A_D_4(1ZDU)

[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




EPH_E_16(4PLE)
NR5A2_HUMAN
[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




RJW_A_3(5L11)
?
[Raw transfer]




71W_A_3(5SYZ)
?
[Raw transfer]




2 PsiBlast_PDB 95.0899%-160 - C3 -4QK4 9.2 STF1_HUMAN
1 PsiBlast_PDB 94.7999%-160 - C3 -4QJR 9.5 STF1_HUMAN
21 PsiBlast_CBE 93.1299%-160 - C3 -1ZDT 11.2 STF1_HUMAN
3 PsiBlast_PDB 92.7099%-175 - C3 -1YOW 10.1 STF1_HUMAN
4 PsiBlast_PDB 87.3193%-155 - C3 -1YP0 10.6 STF1_MOUSE
28 PsiBlast_CBE 78.4260% -43 - C3 -3PLZ 8.2
14 PsiBlast_PDB 78.0760% -93 - C3 -3PLZ 7.5 NR5A2_HUMAN
27 PsiBlast_CBE 77.2959% -44 - C3 -4PLE 10.0 NR5A2_HUMAN
10 PsiBlast_PDB 76.7959% -42 - C3 -4PLE 9.9 NR5A2_HUMAN
5 PsiBlast_PDB 76.6259% -43 - C3 -4RWV 9.7
15 PsiBlast_PDB 76.5959% -37 - C3 -4DOS 7.6
25 PsiBlast_CBE 76.2359% -44 - C3 -4PLE 10.9
23 PsiBlast_CBE 76.0759% -40 - C3 -4DOR 11.0
24 PsiBlast_CBE 76.0659% -41 - C3 -1YUC 10.2
6 PsiBlast_PDB 75.9759% -38 - C3 -4ONI 9.6 NR5A2_HUMAN
16 PsiBlast_PDB 75.9559% -40 - C3 -5SYZ 5.8 ?
22 PsiBlast_CBE 75.7459% -34 - C3 -4ONI 8.7
13 PsiBlast_PDB 75.0660% -49 - C3 -1YOK 9.2
11 PsiBlast_PDB 75.0259% -42 - C3 -5L11 6.2 ?
26 PsiBlast_CBE 74.9659% -37 - C3 -4PLE 10.6 NR5A2_HUMAN
7 PsiBlast_PDB 74.8459% -34 - C3 -1YUC 9.4 NR5A2_HUMAN
12 PsiBlast_PDB 73.7760% -52 - C3 -1ZDU 10.4