@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A2_LRH1: (2016-11-26 )
MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P3A_D_4(1ZDU)

[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




EPH_G_22(4PLE)

[Raw transfer]




EPH_A_9(4PLE)
NR5A2_HUMAN
[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




DR9_A_3(1YMT)
STF1_MOUSE
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




EPH_C_13(4PLE)
NR5A2_HUMAN
[Raw transfer]




EPH_E_16(4PLE)
NR5A2_HUMAN
[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




71W_A_3(5SYZ)
?
[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




RJW_A_3(5L11)
?
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




21 PsiBlast_CBE 85.2899%-150 - C2 -4DOR 11.4
1 PsiBlast_PDB 84.8999%-160 - C2 -1YUC 10.5 NR5A2_HUMAN
27 PsiBlast_CBE 84.7499%-157 - C2 -3PLZ 8.6
26 PsiBlast_CBE 84.5499%-159 - C2 -4PLE 11.8 NR5A2_HUMAN
23 PsiBlast_CBE 84.53100%-148 - C2 -4ONI 11.2
3 PsiBlast_PDB 84.34100%-155 - C2 -4ONI 10.7 NR5A2_HUMAN
12 PsiBlast_PDB 84.0599%-156 - C2 -4DOS 9.7
22 PsiBlast_CBE 83.7399%-154 - C2 -1YUC 11.1
11 PsiBlast_PDB 83.7199%-161 - C2 -5SYZ 7.8 ?
7 PsiBlast_PDB 83.7099%-155 - C2 -4PLE 11.6 NR5A2_HUMAN
9 PsiBlast_PDB 83.6899%-170 - C2 -1YOK 11.7
24 PsiBlast_CBE 83.4899%-155 - C2 -4PLE 12.1
25 PsiBlast_CBE 83.4599%-158 - C2 -4PLE 12.0 NR5A2_HUMAN
4 PsiBlast_PDB 83.4299%-148 - C2 -4RWV 10.6
8 PsiBlast_PDB 83.3599%-164 - C2 -5L11 8.1 ?
5 PsiBlast_PDB 82.93100%-166 - C2 -1ZDU 12.2
10 PsiBlast_PDB 82.6999%-166 - C2 -3PLZ 8.2 NR5A2_HUMAN
50 HHSearch 75.73100%-170 - C2 -3PLZ 8.2 NR5A2_HUMAN
19 PsiBlast_PDB 67.7060%-146 - C2 -4QK4 9.0 STF1_HUMAN
17 PsiBlast_PDB 67.6161%-141 - C2 -1YP0 11.3 STF1_MOUSE
18 PsiBlast_PDB 67.1360%-146 - C2 -4QJR 9.4 STF1_HUMAN
29 PsiBlast_CBE 66.5560%-145 - C2 -1ZDT 11.2 STF1_HUMAN
20 PsiBlast_PDB 66.4260%-162 - C2 -1YOW 9.8 STF1_HUMAN
53 HHSearch 65.3663%-157 - C2 -1YMT 11.6 STF1_MOUSE