@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H2_LXRb: (2016-04-07 )
MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDPDVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]




IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]




67 Fugue 91.71100%-105 - C4 -4NQA - NR1H2_HUMAN -
21 PsiBlast_CBE 91.65100%-105 - C4 -4NQA - NR1H2_HUMAN -
1 PsiBlast_PDB 90.12100%-112 - C4 -4NQA - NR1H2_HUMAN (first) -
11 PsiBlast_PDB 79.6397%-119 - C4 -3L0E 10.3 NR1H2_HUMAN
31 PsiBlast_CBE 79.52100%-116 - C4 -1PQ6 12.6 NR1H2_HUMAN
4 PsiBlast_PDB 78.95100%-123 - C4 -1PQ6 2.1 NR1H2_HUMAN
30 PsiBlast_CBE 78.70100%-130 - C4 -1PQ6 11.9 NR1H2_HUMAN
22 PsiBlast_CBE 78.45100%-115 - C4 -3KFC 9.4 NR1H2_HUMAN
34 PsiBlast_CBE 78.4398%-120 - C4 -4DK8 8.4 NR1H2_HUMAN
25 PsiBlast_CBE 78.33100%-118 - C4 -1PQC 8.0 NR1H2_HUMAN
7 PsiBlast_PDB 78.30100%-118 - C4 -3KFC - NR1H2_HUMAN -
23 PsiBlast_CBE 78.29100%-117 - C4 -3KFC 10.4 NR1H2_HUMAN
29 PsiBlast_CBE 78.27100%-112 - C4 -1PQ9 5.9 NR1H2_HUMAN
28 PsiBlast_CBE 78.23100%-115 - C4 -1PQ9 5.8 NR1H2_HUMAN
6 PsiBlast_PDB 78.15100%-118 - C4 -1PQC - NR1H2_HUMAN -
26 PsiBlast_CBE 78.12100%-112 - C4 -1PQC 8.4 NR1H2_HUMAN
33 PsiBlast_CBE 78.0899%-112 - C4 -1P8D 9.2 NR1H2_HUMAN
32 PsiBlast_CBE 77.9097%-118 - C4 -4RAK 12.0 NR1H2_HUMAN
9 PsiBlast_PDB 77.8599%-113 - C4 -1P8D 9.1 NR1H2_HUMAN
10 PsiBlast_PDB 77.7898%-117 - C4 -4DK8 8.8 NR1H2_HUMAN
12 PsiBlast_PDB 77.7396%-120 - C4 -4DK7 6.6 NR1H2_HUMAN
24 PsiBlast_CBE 77.69100%-129 - C4 -1PQC 3.4 NR1H2_HUMAN
27 PsiBlast_CBE 77.36100%-130 - C4 -1PQ9 6.1 NR1H2_HUMAN
14 PsiBlast_PDB 75.0177%-116 - C4 -3FC6 13.3 NR1H3_MOUSE
38 PsiBlast_CBE 74.1977%-110 - C4 -3FC6 13.1 NR1H3_MOUSE
15 PsiBlast_PDB 73.4577%-115 - C4 -3FAL 9.6 NR1H3_MOUSE
39 PsiBlast_CBE 73.0877%-114 - C4 -3FAL 10.0 NR1H3_MOUSE
8 PsiBlast_PDB 72.9097%-110 - C4 -4RAK 2.4 NR1H2_HUMAN
41 PsiBlast_CBE 72.7676%-110 - C4 -3IPU 8.9 NR1H3_HUMAN
16 PsiBlast_PDB 72.6276%-119 - C4 -3IPQ 12.6 NR1H3_HUMAN
42 PsiBlast_CBE 72.4976%-119 - C4 -3IPS 8.5 NR1H3_HUMAN
17 PsiBlast_PDB 72.4576%-121 - C4 -3IPS 9.7 NR1H3_HUMAN
40 PsiBlast_CBE 72.2976%-119 - C4 -5AVI 9.7 ?
18 PsiBlast_PDB 72.1376%-111 - C4 -3IPU 9.0 NR1H3_HUMAN
20 PsiBlast_PDB 72.1076%-121 - C4 -5AVL 11.1 ?
19 PsiBlast_PDB 71.5176%-119 - C4 -5AVI 9.5 ?
47 HHSearch 67.9880%-122 - C4 -3IPQ 12.6 NR1H3_HUMAN
43 PsiBlast_CBE 67.6178%-117 - C4 -1UHL 5.8 NR1H3_HUMAN