@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H3_LXRa: (2016-04-07 )
MSLWLGAPVPDIPPDSAVELWKPGAQDASSQAQGGSSCILREEARMPHSAGGTAGVGLEAAEPTALLTRAEPPSEPTEIRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




965_A_5(1PQ6)
NR1H2_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




61X_A_5(3KFC)
NR1H2_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




444_E_5(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPV)
NR1H2_HUMAN
[Raw transfer]




444_A_2(1UPW)
NR1H2_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




652_A_5(4RAK)
NR1H2_HUMAN
[Raw transfer]




44B_F_6(1PQ9)
NR1H2_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




66 Fugue 91.3373%-109 * C3 *4NQA - NR1H2_HUMAN -
9 PsiBlast_PDB 80.6295%-121 - C2 -3FAL 9.6 NR1H3_MOUSE
21 PsiBlast_CBE 80.54100%-127 - C2 -5AVI 9.6 ?
22 PsiBlast_CBE 80.52100%-120 - C2 -3IPU 8.9 NR1H3_HUMAN
24 PsiBlast_CBE 80.4595%-118 - C2 -3FC6 13.1 NR1H3_MOUSE
3 PsiBlast_PDB 80.44100%-121 - C2 -3IPU 8.8 NR1H3_HUMAN
25 PsiBlast_CBE 80.3795%-119 - C2 -3FAL 10.0 NR1H3_MOUSE
8 PsiBlast_PDB 80.3295%-125 - C2 -3FC6 13.3 NR1H3_MOUSE
4 PsiBlast_PDB 80.23100%-128 - C2 -5AVI 9.5 ?
23 PsiBlast_CBE 80.01100%-130 - C2 -3IPS 8.5 NR1H3_HUMAN
10 PsiBlast_PDB 79.8198%-113 - C2 -2ACL - NR1H3_MOUSE -
2 PsiBlast_PDB 79.19100%-129 - C2 -3IPS 9.6 NR1H3_HUMAN
5 PsiBlast_PDB 79.07100%-128 - C2 -5AVL 11.1 ?
47 HHSearch 78.64100%-130 - C2 -3IPQ 12.6 NR1H3_HUMAN
1 PsiBlast_PDB 78.64100%-130 - C2 -3IPQ 12.6 NR1H3_HUMAN
29 PsiBlast_CBE 76.7276%-113 - C2 -1P8D 9.2 NR1H2_HUMAN
11 PsiBlast_PDB 75.8376%-114 - C2 -1P8D 9.1 NR1H2_HUMAN
20 PsiBlast_PDB 75.6775%-117 - C2 -3L0E 10.3 NR1H2_HUMAN
7 PsiBlast_PDB 75.6599%-119 - C2 -1UHL 5.8 NR1H3_HUMAN
40 PsiBlast_CBE 75.3876%-114 - C2 -1PQ6 12.6 NR1H2_HUMAN
38 PsiBlast_CBE 75.3276%-111 - C2 -1PQ9 5.9 NR1H2_HUMAN
35 PsiBlast_CBE 75.1976%-110 - C2 -1PQC 8.4 NR1H2_HUMAN
18 PsiBlast_PDB 75.1276%-117 - C2 -3KFC 10.3 NR1H2_HUMAN
16 PsiBlast_PDB 75.1276%-115 - C2 -1PQ9 5.9 NR1H2_HUMAN
32 PsiBlast_CBE 75.1176%-115 - C2 -3KFC 10.3 NR1H2_HUMAN
30 PsiBlast_CBE 75.0576%-116 - C2 -4RAK 12.0 NR1H2_HUMAN
17 PsiBlast_PDB 74.8176%-116 - C2 -1PQC 7.8 NR1H2_HUMAN
15 PsiBlast_PDB 74.4376%-121 - C2 -1PQ6 11.7 NR1H2_HUMAN
34 PsiBlast_CBE 74.4076%-116 - C2 -1PQC 8.0 NR1H2_HUMAN
31 PsiBlast_CBE 74.2176%-111 - C2 -3KFC 9.4 NR1H2_HUMAN
19 PsiBlast_PDB 74.1976%-117 - C2 -4DK8 8.8 NR1H2_HUMAN
37 PsiBlast_CBE 74.0776%-114 - C2 -1PQ9 5.8 NR1H2_HUMAN
14 PsiBlast_PDB 73.5476%-116 - C2 -1UPW 5.9 NR1H2_HUMAN
13 PsiBlast_PDB 73.4876%-120 - C2 -1UPV 6.4 NR1H2_HUMAN
33 PsiBlast_CBE 73.3876%-127 - C2 -1PQC 3.4 NR1H2_HUMAN
36 PsiBlast_CBE 73.3776%-127 - C2 -1PQ9 6.1 NR1H2_HUMAN
41 PsiBlast_CBE 72.9476%-121 - C2 -4DK8 8.4 NR1H2_HUMAN
39 PsiBlast_CBE 72.8476%-129 - C2 -1PQ6 11.9 NR1H2_HUMAN
12 PsiBlast_PDB 71.2676%-109 - C2 -4RAK 10.2 NR1H2_HUMAN