@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR1H4_FXR: (2016-04-07 )
MVMQFQGLENPIQISPHCSCTPSGFFMEMMSMKPAKGVLTEQVAGPLGQNLEVEPYSQYSNVQFPQVQPQISSSSYYSNLGFYPQQPEEWYSPGIYELRRMPAETLYQGETEVAEMPVTKKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OOK_C_6(3OOK)

[Raw transfer]




OMM_C_6(3OMM)

[Raw transfer]




OOK_A_5(3OOK)
NR1H4_HUMAN
[Raw transfer]




OLF_C_6(3OLF)

[Raw transfer]




OOF_A_5(3OOF)
NR1H4_HUMAN
[Raw transfer]




OLF_A_5(3OLF)
NR1H4_HUMAN
[Raw transfer]




OOF_C_6(3OOF)

[Raw transfer]




OMM_A_5(3OMM)
NR1H4_HUMAN
[Raw transfer]




OKI_A_5(3OKI)
NR1H4_HUMAN
[Raw transfer]




OMK_C_6(3OMK)

[Raw transfer]




OMK_A_5(3OMK)
NR1H4_HUMAN
[Raw transfer]




OKI_C_6(3OKI)

[Raw transfer]




088_A_3(3HC6)

[Raw transfer]




37G_A_5(3RUU)

[Raw transfer]




O62_A_3(3DCU)

[Raw transfer]




59G_A_5(3RUT)

[Raw transfer]




P88_A_3(3P88)

[Raw transfer]




OKH_A_4(3OKH)

[Raw transfer]




89P_A_3(3P89)

[Raw transfer]




33Y_A_2(3FLI)

[Raw transfer]




82X_A_3(3HC5)

[Raw transfer]




064_A_3(3DCT)

[Raw transfer]




034_A_4(3RVF)

[Raw transfer]




MUF_B_8(3BEJ)

[Raw transfer]




31D_A_5(4QE8)
?
[Raw transfer]




708_A_3(3GD2)

[Raw transfer]




635_A_2(3L1B)

[Raw transfer]




CHC_G_7(1OT7)
NR1H4_RAT
[Raw transfer]




643_A_3(3FXV)

[Raw transfer]




IVM_A_9(4WVD)
NR1H4_HUMAN
[Raw transfer]




IU5_F_6(1OT7)

[Raw transfer]




XX9_A_3(4OIV)
NR1H4_HUMAN
[Raw transfer]




MUF_A_7(3BEJ)
NR1H4_HUMAN
[Raw transfer]




JN3_A_3(4QE6)
?
[Raw transfer]




XX9_B_4(4OIV)

[Raw transfer]




CHC_F_6(1OSV)

[Raw transfer]




CHC_G_7(1OSV)
NR1H4_RAT
[Raw transfer]




FEX_B_2(1OSH)

[Raw transfer]




IVM_B_14(4WVD)

[Raw transfer]




31D_B_10(4QE8)
?
[Raw transfer]




OKH_A_3(3OKH)

[Raw transfer]




20 PsiBlast_PDB 94.7599%-126 - C3 -3OOK 12.1 NR1H4_HUMAN
24 PsiBlast_CBE 94.4599%-127 - C3 -3OOF 11.7
26 PsiBlast_CBE 93.9499%-128 - C3 -3OMK 11.7
16 PsiBlast_PDB 93.9399%-123 - C3 -3OLF 11.7 NR1H4_HUMAN
15 PsiBlast_PDB 93.6499%-123 - C3 -3OKI 10.8 NR1H4_HUMAN
23 PsiBlast_CBE 93.6299%-126 - C3 -3OOK 12.0
18 PsiBlast_PDB 93.6199%-125 - C3 -3OMM 11.6 NR1H4_HUMAN
17 PsiBlast_PDB 93.3599%-124 - C3 -3OMK 11.7 NR1H4_HUMAN
27 PsiBlast_CBE 93.2799%-125 - C3 -3OLF 11.9
19 PsiBlast_PDB 93.2499%-123 - C3 -3OOF 11.7 NR1H4_HUMAN
25 PsiBlast_CBE 93.0699%-125 - C3 -3OMM 11.9
28 PsiBlast_CBE 92.6199%-124 - C3 -3OKI 10.5
21 PsiBlast_CBE 92.07100%-124 - C3 -3BEJ 9.9
8 PsiBlast_PDB 91.83100%-122 - C3 -3RUU 12.2
4 PsiBlast_PDB 91.82100%-126 - C3 -3HC5 11.8
2 PsiBlast_PDB 91.70100%-122 - C3 -3DCT 11.3
9 PsiBlast_PDB 91.67100%-123 - C3 -4QE6 9.4 ?
3 PsiBlast_PDB 91.58100%-121 - C3 -3DCU 11.4
7 PsiBlast_PDB 91.39100%-117 - C3 -3RUT 11.6
14 PsiBlast_PDB 91.1699%-128 - C3 -3OKH 10.5
1 PsiBlast_PDB 90.80100%-125 - C3 -3BEJ 10.0 NR1H4_HUMAN
5 PsiBlast_PDB 90.29100%-122 - C3 -3RVF 10.8
6 PsiBlast_PDB 90.2199%-131 - C3 -3FLI 9.6
32 PsiBlast_CBE 89.9199%-121 - C3 -3GD2 11.9
31 PsiBlast_CBE 89.8398%-120 - C3 -3P88 11.3
29 PsiBlast_CBE 89.4899%-115 - C3 -3HC6 11.7
35 PsiBlast_CBE 89.2994%-119 - C3 -1OSV 9.9
12 PsiBlast_PDB 89.13100%-130 - C3 -3L1B 10.6
11 PsiBlast_PDB 89.05100%-133 - C3 -1OSH 11.0
13 PsiBlast_PDB 88.7499%-131 - C3 -3FXV 11.5
36 PsiBlast_CBE 88.6894%-123 - C3 -1OSV 9.3 NR1H4_RAT
22 PsiBlast_CBE 88.42100%-122 - C3 -4QE8 4.9 ?
10 PsiBlast_PDB 88.14100%-124 - C3 -4QE8 5.7 ?
37 PsiBlast_CBE 87.7794%-117 - C3 -1OT7 8.6
38 PsiBlast_CBE 87.6094%-114 - C3 -1OT7 8.8 NR1H4_RAT
30 PsiBlast_CBE 87.4199%-124 - C3 -3P89 12.1
34 PsiBlast_CBE 85.0699%-129 - C3 -4OIV 8.8 NR1H4_HUMAN
33 PsiBlast_CBE 84.8899%-119 - C3 -4OIV 9.2
40 PsiBlast_CBE 80.80100%-114 - C3 -4WVD 8.8 NR1H4_HUMAN
39 PsiBlast_CBE 79.84100%-112 - C3 -4WVD 5.7