@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR3C2_MCR: (2016-04-08 )
METKGYHSLPEGLDMERRWGQVSQAVERSSLGPTERTDENNYMEIVNVSCVSGAIPNNSTQGSSKEKQELLPCLQQDNNRPGILTSDIKTELESKELSATVAESMGLYMDSVRDADYSYEQQNQQGSMSPAKIYQNVEQLVKFYKGNGHRPSTLSCVNTPLRSFMSDSGSSVNGGVMRAIVKSPIMCHEKSPSVCSPLNMTSSVCSPAGINSVSSTTASFGSFPVHSPITQGTPLTCSPNAENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSSVSSPANINNSRCSVSSPSNTNNRSTLSSPAASTVGSICSPVNNAFSYTASGTSAGSSTLRDVVPSPDTQEKGAQEVPFPKTEEVESAISNGVTGQLNIVQYIKPEPDGAFSSSCLGGNSKINSDSSFSVPIKQESTKHSCSGTSFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGFDGNCEGSGFPVGIKQEPDDGSYYPEASIPSSAIVGVNSGGQSFHYRIGAQGTISLSRSARDQSFQHLSSFPPVNTLVESWKSHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLGARKSKKLGKLKGIHEEQPQQQQPPPPPPPPQSPEEGTTYIAPAKEPSVNTALVPQLSTISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQLPKVESGNAKPLYFHRK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C0R_C_3(2A3I)

[Raw transfer]




1CA_E_5(2ABI)
MCR_HUMAN
[Raw transfer]




AS4_D_4(2AA2)

[Raw transfer]




1CA_D_4(1Y9R)

[Raw transfer]




1CA_C_3(2AA7)

[Raw transfer]




AS4_A_4(2Q1H)
?
[Raw transfer]




1CA_D_4(2ABI)
MCR_HUMAN
[Raw transfer]




1CA_C_3(1Y9R)
MCR_HUMAN
[Raw transfer]




1CA_F_6(2ABI)

[Raw transfer]




DEX_A_4(3MNP)

[Raw transfer]




1CA_A_4(3RY9)
?
[Raw transfer]




WFG_A_2(3WFG)

[Raw transfer]




STR_A_3(2AA5)
MCR_HUMAN
[Raw transfer]




SNL_A_2(3VHU)

[Raw transfer]




HFN_A_2(4PF3)

[Raw transfer]




SNL_A_4(2AB2)
MCR_HUMAN
[Raw transfer]




STR_D_4(1YA3)
MCR_HUMAN
[Raw transfer]




STR_A_3(2AA6)
MCR_HUMAN
[Raw transfer]




LD1_A_2(3VHV)

[Raw transfer]




STR_B_4(2AA6)

[Raw transfer]




STR_F_6(1YA3)

[Raw transfer]




STR_B_4(2AA5)

[Raw transfer]




STR_A_3(4FN9)
?
[Raw transfer]




WFF_A_2(3WFF)

[Raw transfer]




STR_B_9(4FN9)
?
[Raw transfer]




STR_E_5(1YA3)
MCR_HUMAN
[Raw transfer]




SNL_B_5(2AB2)

[Raw transfer]




NDR_C_3(1SQN)
PRGR_HUMAN
[Raw transfer]




LD2_A_3(3VHV)

[Raw transfer]




3 PsiBlast_PDB 93.2199%-119 - C5 -2AA7 8.6
11 PsiBlast_PDB 93.0398%-116 - C5 -3VHV 8.7
22 PsiBlast_CBE 92.9199%-118 - C5 -2AB2 7.6
1 PsiBlast_PDB 92.7599%-120 - C5 -2AA2 8.7
24 PsiBlast_CBE 92.7499%-117 - C5 -2AA6 8.2
5 PsiBlast_PDB 92.4299%-114 - C5 -2AAX - MCR_HUMAN -
4 PsiBlast_PDB 92.2699%-115 - C5 -2AA6 8.2 MCR_HUMAN
8 PsiBlast_PDB 91.9998%-111 - C5 -3WFF 7.2
9 PsiBlast_PDB 91.9398%-109 - C5 -3WFG 7.8
10 PsiBlast_PDB 91.7998%-109 - C5 -4PF3 9.2
7 PsiBlast_PDB 91.7899%-120 - C5 -3VHU 9.5
6 PsiBlast_PDB 91.6299%-112 - C5 -2AB2 7.2 MCR_HUMAN
2 PsiBlast_PDB 91.4999%-115 - C5 -2AA5 8.0 MCR_HUMAN
13 PsiBlast_PDB 91.2399%-114 - C5 -2A3I 8.9
21 PsiBlast_CBE 90.8799%-116 - C5 -2AA5 8.0
34 PsiBlast_CBE 89.7199%-128 - C5 -2OAX - MCR_HUMAN -
16 PsiBlast_PDB 88.8799%-123 - C5 -2OAX - MCR_HUMAN -
12 PsiBlast_PDB 88.6599%-130 - C5 -2ABI 8.7 MCR_HUMAN
26 PsiBlast_CBE 88.5799%-122 - C5 -2ABI 8.6 MCR_HUMAN
30 PsiBlast_CBE 88.2999%-125 - C5 -2OAX - -
15 PsiBlast_PDB 87.5599%-124 - C5 -1YA3 7.8 MCR_HUMAN
27 PsiBlast_CBE 87.2099%-122 - C5 -1YA3 6.8
28 PsiBlast_CBE 86.9099%-127 - C5 -1YA3 7.7 MCR_HUMAN
25 PsiBlast_CBE 86.6899%-123 - C5 -2ABI 8.1
29 PsiBlast_CBE 86.3599%-118 - C5 -1Y9R 8.6
14 PsiBlast_PDB 86.1099%-122 - C5 -1Y9R 7.8 MCR_HUMAN
17 PsiBlast_PDB 82.8174%-117 - C5 -2Q1H 8.5 ?
19 PsiBlast_PDB 82.5470%-110 - C5 -3RY9 8.6 ?
35 PsiBlast_CBE 80.0371%-109 - C5 -4FN9 7.4 ?
36 PsiBlast_CBE 79.9471%-107 - C5 -4FN9 7.8 ?