@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : H_NR5A2_LRH1: (2017-01-06 )
MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P3A_D_4(1ZDU)

[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




21 PsiBlast_CBE 96.4699%-133 - C1 -4DOR 11.4
23 PsiBlast_CBE 95.82100%-134 - C1 -4ONI 11.1
1 PsiBlast_PDB 94.8799%-140 - C1 -1YUC 10.4 NR5A2_HUMAN
3 PsiBlast_PDB 94.47100%-137 - C1 -4ONI 10.7 NR5A2_HUMAN
24 PsiBlast_CBE 94.3899%-138 - C1 -3PLZ 8.6
5 PsiBlast_PDB 92.75100%-143 - C1 -1ZDU 12.1
4 PsiBlast_PDB 92.5499%-131 - C1 -4RWV 10.4
22 PsiBlast_CBE 92.5399%-137 - C1 -1YUC 11.1
8 PsiBlast_PDB 92.0399%-138 - C1 -4DOS 9.7
6 PsiBlast_PDB 91.9999%-144 - C1 -1YOK 11.6
7 PsiBlast_PDB 91.0299%-142 - C1 -3PLZ 8.1 NR5A2_HUMAN
9 PsiBlast_PDB 86.2297%-145 - C1 -4IS8 - NR5A2_HUMAN -
2 PsiBlast_PDB 85.8599%-141 - C1 -4DOR - NR5A2_HUMAN -