@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : M_NR1A1_THA: (2016-04-07 )
MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHVATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQSSILYKGAAAEGRPGGSLGVHPEGQQLLGMHVVQGPQVRQLEQQLGEAGSLRGPVLQHQSPKSPQQRLLELLHRSGILHSRAVCGEDDSSEASSLSSSSDTEDTEVCEDQAGKAASP

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PFA_D_4(1N46)
THB_HUMAN
[Raw transfer]




G24_B_2(1Q4X)
THB_HUMAN
[Raw transfer]




T3_E_5(1BSX)
THB_HUMAN
[Raw transfer]




PFA_C_3(1N46)
THB_HUMAN
[Raw transfer]




T3_X_8(1XZX)
THB_HUMAN
[Raw transfer]




T3_A_3(3UVV)
THA_CHICK
[Raw transfer]




IH5_A_2(1NAX)
THB_HUMAN
[Raw transfer]




OEF_A_2(2J4A)
THB_HUMAN
[Raw transfer]




T3_E_5(1BSX)
THB_HUMAN
[Raw transfer]




T3_F_6(1BSX)
THB_HUMAN
[Raw transfer]




4HY_A_4(2PIN)
THB_HUMAN
[Raw transfer]




4HY_A_3(3D57)
THB_HUMAN
[Raw transfer]




T44_X_8(1Y0X)
THB_HUMAN
[Raw transfer]




4HY_A_2(1NQ1)
THB_HUMAN
[Raw transfer]




4HY_B_6(2PIN)
THB_HUMAN
[Raw transfer]




4HY_A_2(1NQ0)
THB_HUMAN
[Raw transfer]




4HY_A_3(1NQ2)
THB_HUMAN
[Raw transfer]




1 PsiBlast_PDB 85.9490% -94 - C1 -3UVV 7.1 THA_CHICK
48 Fugue 83.0371% -87 - C1 -1BSX 7.8 THB_HUMAN
22 PsiBlast_CBE 82.6279%-104 - C1 -1N46 8.8 THB_HUMAN
12 PsiBlast_PDB 81.4780%-100 - C1 -1Q4X 8.5 THB_HUMAN
9 PsiBlast_PDB 81.2580% -91 - C1 -2J4A 8.5 THB_HUMAN
4 PsiBlast_PDB 81.1280%-100 - C1 -1XZX 8.0 THB_HUMAN
6 PsiBlast_PDB 81.0979% -98 - C1 -1NQ0 8.0 THB_HUMAN
2 PsiBlast_PDB 80.7480% -95 - C1 -1NQ1 8.0 THB_HUMAN
5 PsiBlast_PDB 80.6480% -95 - C1 -1Y0X 8.2 THB_HUMAN
13 PsiBlast_PDB 80.5480% -91 - C1 -2PIN 8.3 THB_HUMAN
23 PsiBlast_CBE 80.5180% -90 - C1 -2PIN 8.1 THB_HUMAN
14 PsiBlast_PDB 80.2281% -96 - C1 -3D57 8.3 THB_HUMAN
10 PsiBlast_PDB 79.7780% -92 - C1 -1NAX 7.9 THB_HUMAN
8 PsiBlast_PDB 79.7079% -86 - C1 -1N46 8.8 THB_HUMAN
7 PsiBlast_PDB 79.5779% -91 - C1 -1NQ2 6.9 THB_HUMAN
21 PsiBlast_CBE 78.9080% -98 - C1 -1BSX 7.7 THB_HUMAN
3 PsiBlast_PDB 78.7280% -98 - C1 -1BSX 7.7 THB_HUMAN