@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : M_NR1F2_RORB: (2016-04-07 )
MCENQPKTKADGTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGTYANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ARL_A_3(1NQ7)
RORB_RAT
[Raw transfer]




REA_C_3(1N4H)
RORB_RAT
[Raw transfer]




C3S_B_2(1S0X)

[Raw transfer]




4D8_B_7(4S15)

[Raw transfer]




4D8_A_5(4S15)
RORA_HUMAN
[Raw transfer]




4D8_A_3(4S14)

[Raw transfer]




HC3_A_5(3L0L)
RORG_HUMAN
[Raw transfer]




NBH_A_5(4NIE)
RORG_HUMAN
[Raw transfer]




STE_C_3(1K4W)
RORB_RAT
[Raw transfer]




39K_A_3(4QM0)
RORG_HUMAN
[Raw transfer]




3QQ_A_5(4WLB)
RORG_HUMAN
[Raw transfer]




43V_A_3(4XT9)
?
[Raw transfer]




HC9_A_3(3L0J)

[Raw transfer]




HC2_A_3(3KYT)

[Raw transfer]




3SX_A_4(4WQP)
RORG_HUMAN
[Raw transfer]




DGX_A_3(3B0W)
RORG_HUMAN
[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




CLR_B_2(1N83)

[Raw transfer]




3SN_A_5(4WPF)
RORG_HUMAN
[Raw transfer]




ZBD_A_4(4YMQ)
?
[Raw transfer]




444_A_3(4NB6)
RORG_HUMAN
[Raw transfer]




4P3_A_5(4ZJR)

[Raw transfer]




3 PsiBlast_PDB 97.1799%-132 - C1 -1NQ7 8.2 RORB_RAT
1 PsiBlast_PDB 96.3099%-130 - C1 -1N4H 7.3 RORB_RAT
2 PsiBlast_PDB 95.0099%-133 - C1 -1K4W 6.0 RORB_RAT
4 PsiBlast_PDB 84.5062%-125 - C1 -4S15 8.5 RORA_HUMAN
6 PsiBlast_PDB 82.9062%-122 - C1 -1S0X 9.5
21 PsiBlast_CBE 82.8462%-118 - C1 -4S15 8.2
5 PsiBlast_PDB 82.7462%-123 - C1 -1N83 8.1
54 HHSearch 81.8761%-125 - C1 -1N83 8.1
14 PsiBlast_PDB 81.5348%-121 - C1 -3L0L 8.1 RORG_HUMAN
17 PsiBlast_PDB 81.2648%-122 - C1 -3L0J 8.3
7 PsiBlast_PDB 80.6648%-122 - C1 -4S14 7.3
8 PsiBlast_PDB 80.3048%-114 - C1 -4WPF 6.0 RORG_HUMAN
16 PsiBlast_PDB 79.7448%-123 - C1 -3KYT 7.4
12 PsiBlast_PDB 79.6348%-115 - C1 -4WLB 6.1 RORG_HUMAN
15 PsiBlast_PDB 79.4947%-120 - C1 -4NIE 6.7 RORG_HUMAN
9 PsiBlast_PDB 79.1250%-115 - C1 -4YMQ 9.0 ?
19 PsiBlast_PDB 78.8648%-119 - C1 -4XT9 6.7 ?
13 PsiBlast_PDB 74.1548%-117 - C1 -4WQP 8.1 RORG_HUMAN
18 PsiBlast_PDB 73.8148%-120 - C1 -3B0W 8.0 RORG_HUMAN
11 PsiBlast_PDB 73.1048%-114 - C1 -4QM0 6.6 RORG_HUMAN
10 PsiBlast_PDB 72.0548%-119 - C1 -4NB6 3.4 RORG_HUMAN