@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : M_NR1H2_LXRb: (2016-04-07 )
MSSPTSSLDTPVPGNGSPQPSTSATSPTIKEEGQETDPPPGSEGSSSAYIVVILEPEDEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYACRGSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPSEPAASSSGRPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

61X_B_6(3KFC)
NR1H2_HUMAN
[Raw transfer]




61X_D_7(3KFC)
NR1H2_HUMAN
[Raw transfer]




44B_H_8(1PQ9)
NR1H2_HUMAN
[Raw transfer]




444_H_8(1PQC)
NR1H2_HUMAN
[Raw transfer]




965_D_7(1PQ6)
NR1H2_HUMAN
[Raw transfer]




965_B_6(1PQ6)
NR1H2_HUMAN
[Raw transfer]




LX2_D_8(3FC6)
NR1H3_MOUSE
[Raw transfer]




LX2_B_6(3FC6)
NR1H3_MOUSE
[Raw transfer]




CO1_E_5(1P8D)
NR1H2_HUMAN
[Raw transfer]




CO1_F_6(1P8D)
NR1H2_HUMAN
[Raw transfer]




652_B_7(4RAK)
NR1H2_HUMAN
[Raw transfer]




O40_B_6(3IPU)
NR1H3_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




965_A_3(3IPQ)
NR1H3_HUMAN
[Raw transfer]




LO2_B_6(3FAL)
NR1H3_MOUSE
[Raw transfer]




LO2_D_8(3FAL)
NR1H3_MOUSE
[Raw transfer]




G58_A_3(3L0E)
NR1H2_HUMAN
[Raw transfer]




0KS_A_5(4DK7)
NR1H2_HUMAN
[Raw transfer]




4KQ_A_3(5AVL)
?
[Raw transfer]




O40_A_5(3IPU)
NR1H3_HUMAN
[Raw transfer]




O90_A_6(3IPS)
NR1H3_HUMAN
[Raw transfer]




4KM_A_5(5AVI)
?
[Raw transfer]




444_G_7(1PQC)
NR1H2_HUMAN
[Raw transfer]




4KM_C_6(5AVI)
?
[Raw transfer]




444_F_6(1PQC)
NR1H2_HUMAN
[Raw transfer]




0KT_A_5(4DK8)
NR1H2_HUMAN
[Raw transfer]




44B_L_12(1PQ9)
NR1H2_HUMAN
[Raw transfer]




444_E_5(1UHL)
NR1H3_HUMAN
[Raw transfer]




0KT_C_11(4DK8)
NR1H2_HUMAN
[Raw transfer]




O90_B_7(3IPS)
NR1H3_HUMAN
[Raw transfer]




44B_J_10(1PQ9)
NR1H2_HUMAN
[Raw transfer]




BU1_A_3(4RAK)
NR1H2_HUMAN
[Raw transfer]




IPA_A_8(1PQ6)
NR1H2_HUMAN
[Raw transfer]




30 PsiBlast_CBE 80.0599%-128 - C2 -1PQ6 11.9 NR1H2_HUMAN
24 PsiBlast_CBE 79.6699%-128 - C2 -1PQC 3.4 NR1H2_HUMAN
27 PsiBlast_CBE 79.3999%-129 - C2 -1PQ9 6.1 NR1H2_HUMAN
4 PsiBlast_PDB 78.9399%-122 - C2 -1PQ6 2.1 NR1H2_HUMAN
34 PsiBlast_CBE 78.7898%-119 - C2 -4DK8 8.4 NR1H2_HUMAN
11 PsiBlast_PDB 78.6596%-118 - C2 -3L0E 10.3 NR1H2_HUMAN
32 PsiBlast_CBE 78.1598%-117 - C2 -4RAK 12.0 NR1H2_HUMAN
31 PsiBlast_CBE 78.1399%-115 - C2 -1PQ6 12.6 NR1H2_HUMAN
23 PsiBlast_CBE 78.1199%-116 - C2 -3KFC 10.4 NR1H2_HUMAN
25 PsiBlast_CBE 78.0299%-117 - C2 -1PQC 8.0 NR1H2_HUMAN
28 PsiBlast_CBE 77.6499%-114 - C2 -1PQ9 5.8 NR1H2_HUMAN
10 PsiBlast_PDB 77.5698%-117 - C2 -4DK8 8.8 NR1H2_HUMAN
12 PsiBlast_PDB 77.5096%-119 - C2 -4DK7 6.6 NR1H2_HUMAN
22 PsiBlast_CBE 77.3299%-114 - C2 -3KFC 9.4 NR1H2_HUMAN
29 PsiBlast_CBE 76.9599%-111 - C2 -1PQ9 5.9 NR1H2_HUMAN
33 PsiBlast_CBE 76.9498%-112 - C2 -1P8D 9.2 NR1H2_HUMAN
26 PsiBlast_CBE 76.7899%-111 - C2 -1PQC 8.4 NR1H2_HUMAN
9 PsiBlast_PDB 76.7598%-112 - C2 -1P8D 9.1 NR1H2_HUMAN
48 HHSearch 73.7377%-118 - C2 -3IPQ 12.6 NR1H3_HUMAN
16 PsiBlast_PDB 73.5976%-118 - C2 -3IPQ 12.6 NR1H3_HUMAN
14 PsiBlast_PDB 73.5677%-115 - C2 -3FC6 13.3 NR1H3_MOUSE
20 PsiBlast_PDB 73.4376%-120 - C2 -5AVL 11.1 ?
17 PsiBlast_PDB 72.8976%-120 - C2 -3IPS 9.7 NR1H3_HUMAN
40 PsiBlast_CBE 72.7076%-118 - C2 -3IPS 8.5 NR1H3_HUMAN
38 PsiBlast_CBE 72.6576%-118 - C2 -5AVI 9.7 ?
19 PsiBlast_PDB 72.5276%-118 - C2 -5AVI 9.5 ?
41 PsiBlast_CBE 72.2477%-109 * C2 *3FC6 13.1 NR1H3_MOUSE
15 PsiBlast_PDB 72.0077%-114 - C2 -3FAL 9.6 NR1H3_MOUSE
8 PsiBlast_PDB 71.9698%-109 - C2 -4RAK 2.4 NR1H2_HUMAN
42 PsiBlast_CBE 71.5477%-113 - C2 -3FAL 10.0 NR1H3_MOUSE
39 PsiBlast_CBE 71.5076%-109 - C2 -3IPU 8.9 NR1H3_HUMAN
18 PsiBlast_PDB 70.7176%-110 - C2 -3IPU 9.0 NR1H3_HUMAN
43 PsiBlast_CBE 68.5578%-116 - C2 -1UHL 5.8 NR1H3_HUMAN