@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : M_NR3B1_ERR1: (2016-04-07 )
MSSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVTLASGPAPARCLPGHKEEEDGEGAGSGEQGSGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVNALVSHLLVVEPEKLYAMPDPASPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLPCTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

047_A_3(2PJL)
ERR1_HUMAN
[Raw transfer]




047_B_4(2PJL)
ERR1_HUMAN
[Raw transfer]




1OH_A_2(2ZAS)
ERR3_HUMAN
[Raw transfer]




OHT_A_2(2GPU)

[Raw transfer]




TXF_D_9(2EWP)
ERR3_HUMAN
[Raw transfer]




OHT_A_2(2P7Z)
ERR3_HUMAN
[Raw transfer]




TXF_C_8(2EWP)
ERR3_HUMAN
[Raw transfer]




OHT_D_4(1VJB)
ERR3_HUMAN
[Raw transfer]




TXF_A_6(2EWP)
ERR3_HUMAN
[Raw transfer]




OHT_C_3(1VJB)
ERR3_HUMAN
[Raw transfer]




TXF_E_10(2EWP)

[Raw transfer]




2OH_A_3(2P7G)
ERR3_HUMAN
[Raw transfer]




2OH_A_2(2E2R)
ERR3_HUMAN
[Raw transfer]




2OH_A_2(2E2R)
ERR3_HUMAN
[Raw transfer]




BPZ_A_2(2ZKC)
ERR3_HUMAN
[Raw transfer]




DES_H_8(1S9P)

[Raw transfer]




TXF_B_7(2EWP)
ERR3_HUMAN
[Raw transfer]




43M_A_2(2P7A)
ERR3_HUMAN
[Raw transfer]




1BA_A_5(2GPP)
ERR3_HUMAN
[Raw transfer]




DES_E_5(1S9P)
ERR3_MOUSE
[Raw transfer]




DES_F_6(1S9P)
ERR3_MOUSE
[Raw transfer]




DES_G_7(1S9P)
ERR3_MOUSE
[Raw transfer]




5FB_A_2(3K6P)
ERR1_HUMAN
[Raw transfer]




5FB_A_2(3K6P)
ERR1_HUMAN
[Raw transfer]




CHD_E_5(1S9Q)
ERR3_MOUSE
[Raw transfer]




1 PsiBlast_PDB 92.4898%-142 - C2 -3K6P 6.8 ERR1_HUMAN
43 HHSearch 89.5698%-139 - C2 -3K6P 6.8 ERR1_HUMAN
22 PsiBlast_CBE 89.5097%-139 - C2 -2PJL 9.3 ERR1_HUMAN
4 PsiBlast_PDB 88.6997%-140 - C2 -2PJL 9.4 ERR1_HUMAN
34 PsiBlast_CBE 82.5962%-126 - C2 -2EWP 7.4 ERR3_HUMAN
20 PsiBlast_PDB 82.4762%-129 - C2 -2P7A 4.2 ERR3_HUMAN
14 PsiBlast_PDB 82.2262%-129 - C2 -2ZAS 6.9 ERR3_HUMAN
35 PsiBlast_CBE 82.1362%-126 - C2 -2EWP 8.8 ERR3_HUMAN
36 PsiBlast_CBE 82.0662%-128 - C2 -2EWP 9.1 ERR3_HUMAN
38 PsiBlast_CBE 81.9562%-127 - C2 -2P7G 6.8 ERR3_HUMAN
13 PsiBlast_PDB 81.8262%-128 - C2 -2E2R 6.9 ERR3_HUMAN
23 PsiBlast_CBE 81.3462%-122 - C2 -1S9P 7.2
9 PsiBlast_PDB 81.3462%-124 - C2 -2GPP 7.7 ERR3_HUMAN
47 HHSearch 80.8164%-131 - C2 -2E2R 6.9 ERR3_HUMAN
16 PsiBlast_PDB 80.7262%-125 - C2 -2ZKC 8.4 ERR3_HUMAN
12 PsiBlast_PDB 80.6862%-128 - C2 -2EWP 8.1 ERR3_HUMAN
17 PsiBlast_PDB 79.6762%-123 - C2 -1S9Q 3.9 ERR3_MOUSE
10 PsiBlast_PDB 79.4962%-129 - C2 -2GPU 7.9
25 PsiBlast_CBE 78.7062%-120 - C2 -1S9P 6.8 ERR3_MOUSE
33 PsiBlast_CBE 77.7562%-132 - C2 -2EWP 7.9
5 PsiBlast_PDB 76.9762%-119 - C2 -1S9P 7.0 ERR3_MOUSE
24 PsiBlast_CBE 76.9662%-118 - C2 -1S9P 5.8 ERR3_MOUSE
37 PsiBlast_CBE 75.4662%-120 - C2 -2P7Z 8.0 ERR3_HUMAN
39 PsiBlast_CBE 75.2662%-115 - C2 -1VJB 7.3 ERR3_HUMAN
18 PsiBlast_PDB 75.1862%-121 - C2 -1VJB 6.9 ERR3_HUMAN