@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : M_NR5A1_STF1: (2016-04-07 )
MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPPPDYMLPPSLHAPEPKALVSGPPSGPLGDIGAPSLPMSVPGPHGPLAGYLYPAFSNRTIKSEYPEPYASPPQQPGPPYSYPEPFSGGPNVPELILQLLQLEPEEDQVRARIVGCLQEPAKSGSDQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVSGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




P3A_D_4(1ZDU)

[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




1 PsiBlast_PDB 93.8599%-150 - C4 -1YP0 10.7 STF1_MOUSE
4 PsiBlast_PDB 91.0792%-146 - C4 -4QK4 9.1 STF1_HUMAN
3 PsiBlast_PDB 90.4592%-146 - C4 -4QJR 9.8 STF1_HUMAN
21 PsiBlast_CBE 90.2892%-149 - C4 -1ZDT 11.2 STF1_HUMAN
2 PsiBlast_PDB 89.4892%-153 - C4 -1YOW 10.2 STF1_HUMAN
25 PsiBlast_CBE 83.0459%-145 - C4 -3PLZ 8.2
12 PsiBlast_PDB 80.6459%-146 - C4 -4DOS 8.1
10 PsiBlast_PDB 80.3659%-151 - C4 -3PLZ 7.6 NR5A2_HUMAN
5 PsiBlast_PDB 80.1959%-144 - C4 -4RWV 9.8
8 PsiBlast_PDB 79.9759%-148 - C4 -4ONI 9.6 NR5A2_HUMAN
24 PsiBlast_CBE 79.7859%-148 - C4 -1YUC 10.0
22 PsiBlast_CBE 79.7059%-143 - C4 -4ONI 9.1
23 PsiBlast_CBE 78.9959%-144 - C4 -4DOR 11.0
11 PsiBlast_PDB 78.7859%-150 - C4 -1YOK 9.2
6 PsiBlast_PDB 78.4859%-149 - C4 -1YUC 9.4 NR5A2_HUMAN
9 PsiBlast_PDB 78.3959%-152 - C4 -1ZDU 10.2