@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : M_NR5A2_LRH1: (2016-04-07 )
MSASLDTGDFQEFLKHGLTAIASAPGSETRHSPKREEQLREKRAGLPDRHRRPIPARSRLVMLPKVETEAPGLVRSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTSAIQNIHSASKGLPLSHVALPPTDYDRSPFVTSPISMTMPPHSSLHGYQPYGHFPSRAIKSEYPDPYSSSPESMMGYSYMDGYQTNSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKRA

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PIK_A_3(4QK4)
STF1_HUMAN
[Raw transfer]




P3A_D_4(1ZDU)

[Raw transfer]




EPH_B_5(4DOR)

[Raw transfer]




EPH_A_5(4ONI)
NR5A2_HUMAN
[Raw transfer]




P6L_B_9(4ONI)

[Raw transfer]




PEF_F_6(1ZDT)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4QJR)
STF1_HUMAN
[Raw transfer]




PIZ_A_3(4RWV)

[Raw transfer]




P6L_D_4(1YOK)

[Raw transfer]




EPH_F_6(1YUC)

[Raw transfer]




P0E_C_3(1YOW)
STF1_HUMAN
[Raw transfer]




EPH_E_5(1YUC)
NR5A2_HUMAN
[Raw transfer]




PEF_C_3(1YP0)
STF1_MOUSE
[Raw transfer]




PLC_A_6(4DOS)

[Raw transfer]




470_A_5(3PLZ)
NR5A2_HUMAN
[Raw transfer]




470_B_7(3PLZ)

[Raw transfer]




1PE_A_4(4DOS)

[Raw transfer]




12 PsiBlast_PDB 94.0887%-132 - C2 -4DOS 7.9
25 PsiBlast_CBE 93.8888%-137 - C2 -3PLZ 7.0
22 PsiBlast_CBE 93.4787%-128 - C2 -4DOR 10.9
11 PsiBlast_PDB 92.9588%-140 - C2 -3PLZ 6.2 NR5A2_HUMAN
24 PsiBlast_CBE 92.7188%-128 - C2 -4ONI 9.0
4 PsiBlast_PDB 92.4687%-133 - C2 -1YUC 9.8 NR5A2_HUMAN
9 PsiBlast_PDB 92.3288%-139 - C2 -1ZDU 8.9
10 PsiBlast_PDB 92.2888%-140 - C2 -1YOK 7.1
6 PsiBlast_PDB 92.1688%-132 - C2 -4ONI 9.6 NR5A2_HUMAN
23 PsiBlast_CBE 91.5587%-131 - C2 -1YUC 10.3
7 PsiBlast_PDB 90.3987%-126 - C2 -4RWV 5.1
16 PsiBlast_PDB 79.8957%-119 - C2 -1YOW 8.2 STF1_HUMAN
15 PsiBlast_PDB 79.8457%-111 - C2 -4QK4 7.7 STF1_HUMAN
13 PsiBlast_PDB 79.7057%-107 - C2 -1YP0 9.6 STF1_MOUSE
26 PsiBlast_CBE 79.6857%-111 - C2 -1ZDT 10.5 STF1_HUMAN
14 PsiBlast_PDB 78.6957%-110 - C2 -4QJR 7.2 STF1_HUMAN