@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : X_NR1I1_VDR: (2016-04-07 )
MEFMAATTSIADTDMEFDKNVPRICGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKAMFTCPFNGDCRITKDNRRHCQSCRLKRCVDIGMMKEFILTDEEVQRKRQMINKRKSEEALKESMRPKISDEQQKMIDILLEAHRKTFDTTYSDFNKFRPPVRENVDPFRRITRSSSVHTQGSPSEDSDVFTSSPDSSEHGFFSASLFGQFEYSSMGGKSGELSMLPHIADLVSYSIQKIIGFAKMIPGFRDLIAEDQIALLKSSVIEVIMLRSNQSFSLDDMSWTCGSEDFKYKVDDVTQAGHNMELLEPLVKFQVGLKKLDLHEEEHVLLMAICILSPDRPGLQDKALVESIQDRLSSTLQTYILCKHPPPGSRLLYAKMIQKLADLRSLNEEHSKQYRSISFLPEHSMKLTPLMLEVFSDEIP

Atome Classification :

(73 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VHW_A_2(3VHW)
VDR_HUMAN
[Raw transfer]




VDA_A_3(2ZL9)
VDR_RAT
[Raw transfer]




TFY_A_2(4ITF)
VDR_HUMAN
[Raw transfer]




VDB_A_3(2ZLA)
VDR_RAT
[Raw transfer]




TEY_A_2(4ITE)
VDR_HUMAN
[Raw transfer]




O1C_B_2(2HB7)
VDR_HUMAN
[Raw transfer]




VDX_C_3(2HC4)
VDRA_DANRE
[Raw transfer]




C3O_B_2(2HAS)
VDR_HUMAN
[Raw transfer]




ED9_A_2(3WGP)
VDR_HUMAN
[Raw transfer]




BIV_C_3(2HCD)
VDRA_DANRE
[Raw transfer]




OCC_B_2(2HAR)
VDR_HUMAN
[Raw transfer]




KH1_B_2(1IE8)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2I)
VDR_HUMAN
[Raw transfer]




MVD_B_2(2HB8)
VDR_HUMAN
[Raw transfer]




YSD_A_3(3VRV)
VDR_RAT
[Raw transfer]




0VP_A_3(4G21)
VDRA_DANRE
[Raw transfer]




DS6_A_2(3AZ3)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3OGT)
VDR_HUMAN
[Raw transfer]




0VP_A_3(4G1Z)
VDRA_DANRE
[Raw transfer]




0VK_A_3(4G1D)
VDRA_DANRE
[Raw transfer]




YS5_A_3(3VRW)
VDR_RAT
[Raw transfer]




484_A_3(4G20)
VDRA_DANRE
[Raw transfer]




VDX_C_3(1RK3)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA3)
VDRA_DANRE
[Raw transfer]




VDX_B_2(1DB1)
VDR_HUMAN
[Raw transfer]




FMV_A_2(3TKC)
?
[Raw transfer]




VD5_A_3(2O4R)
VDR_RAT
[Raw transfer]




0VO_A_3(4G1Y)
VDRA_DANRE
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




VDZ_A_3(1RJK)
VDR_RAT
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




BIV_A_3(4IA1)
VDRA_DANRE
[Raw transfer]




TX5_B_2(1TXI)
VDR_HUMAN
[Raw transfer]




C33_B_2(2HAM)
VDR_HUMAN
[Raw transfer]




EB1_B_2(1S0Z)
VDR_HUMAN
[Raw transfer]




0S4_A_3(4FHI)
VDRA_DANRE
[Raw transfer]




MC9_B_2(1S19)
VDR_HUMAN
[Raw transfer]




ZNE_A_2(3KPZ)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA7)
VDRA_DANRE
[Raw transfer]




VDX_A_2(3M7R)
VDR_HUMAN
[Raw transfer]




CA9_A_2(3AUR)
VDR_HUMAN
[Raw transfer]




YS3_A_3(3VRU)
VDR_RAT
[Raw transfer]




CA9_A_2(3AUQ)
VDR_HUMAN
[Raw transfer]




BIV_A_3(4IA2)
VDRA_DANRE
[Raw transfer]




DS3_A_2(3AZ2)
VDR_HUMAN
[Raw transfer]




23R_X_2(3A40)
VDR_HUMAN
[Raw transfer]




ZYD_A_2(3P8X)
VDR_HUMAN
[Raw transfer]




VDX_B_2(1IE9)
VDR_HUMAN
[Raw transfer]




DS2_A_2(3AZ1)
VDR_HUMAN
[Raw transfer]




0CO_A_2(3CS6)
VDR_HUMAN
[Raw transfer]




VD4_A_3(2O4J)
VDR_RAT
[Raw transfer]




2MV_X_2(3A3Z)
VDR_HUMAN
[Raw transfer]




XE4_C_3(2HBH)
VDRA_DANRE
[Raw transfer]




MCZ_A_2(3B0T)
VDR_HUMAN
[Raw transfer]




3AJ_A_2(3WWR)
VDR_HUMAN
[Raw transfer]




3EV_A_2(3A78)
VDR_HUMAN
[Raw transfer]




COV_A_2(3CS4)
VDR_HUMAN
[Raw transfer]




EIM_A_2(3AX8)
VDR_HUMAN
[Raw transfer]




TEJ_A_3(3A2H)
VDR_RAT
[Raw transfer]




0U3_A_3(4FHH)
VDRA_DANRE
[Raw transfer]




0VQ_A_3(4G2H)
VDRA_DANRE
[Raw transfer]




0VQ_A_2(4G2I)
VDR_HUMAN
[Raw transfer]




6DS_A_2(3W0C)
VDR_HUMAN
[Raw transfer]




TEJ_A_2(3A2J)
VDR_HUMAN
[Raw transfer]




H97_A_3(3O1E)
VDRA_DANRE
[Raw transfer]




G72_A_3(3O1D)
VDRA_DANRE
[Raw transfer]




2KB_A_2(4PA2)
VDR_HUMAN
[Raw transfer]




C5D_A_4(3DR1)
VDRA_DANRE
[Raw transfer]




DS5_A_2(3W0A)
VDR_HUMAN
[Raw transfer]




DS4_A_2(3W0Y)
VDR_HUMAN
[Raw transfer]




4OA_C_3(4Q0A)
VDRA_DANRE
[Raw transfer]




10S_A_3(3VJS)
VDR_RAT
[Raw transfer]




10R_A_3(3VJT)
VDR_RAT
[Raw transfer]




52 PsiBlast_CBE 92.5966%-118 - C4 -4IA2 12.2 VDRA_DANRE
61 PsiBlast_CBE 92.3566%-119 - C4 -4FHH 9.2 VDRA_DANRE
45 PsiBlast_CBE 92.2066%-120 - C4 -3O1D 12.5 VDRA_DANRE
48 PsiBlast_CBE 92.1566%-120 - C4 -2HC4 10.7 VDRA_DANRE
53 PsiBlast_CBE 91.8666%-118 - C4 -4IA1 12.1 VDRA_DANRE
47 PsiBlast_CBE 91.8266%-120 - C4 -2HCD 12.5 VDRA_DANRE
50 PsiBlast_CBE 91.7866%-120 - C4 -4IA7 12.3 VDRA_DANRE
60 PsiBlast_CBE 91.6366%-119 - C4 -4FHI 9.3 VDRA_DANRE
49 PsiBlast_CBE 91.5866%-118 - C4 -2HBH 10.5 VDRA_DANRE
44 PsiBlast_CBE 91.5266%-120 - C4 -3O1E 12.4 VDRA_DANRE
58 PsiBlast_CBE 91.4866%-120 - C4 -4G1Y 9.2 VDRA_DANRE
51 PsiBlast_CBE 91.4866%-118 - C4 -4IA3 12.2 VDRA_DANRE
43 PsiBlast_CBE 91.4766%-119 - C4 -4Q0A 7.4 VDRA_DANRE
55 PsiBlast_CBE 91.3666%-119 - C4 -4G21 9.9 VDRA_DANRE
56 PsiBlast_CBE 91.2666%-120 - C4 -4G20 10.3 VDRA_DANRE
46 PsiBlast_CBE 91.1366%-117 - C4 -3DR1 10.9 VDRA_DANRE
57 PsiBlast_CBE 90.9466%-116 - C4 -4G1Z 10.4 VDRA_DANRE
54 PsiBlast_CBE 90.8766%-119 - C4 -4G2H 11.1 VDRA_DANRE
59 PsiBlast_CBE 90.8466%-116 - C4 -4G1D 10.0 VDRA_DANRE
41 PsiBlast_CBE 89.0065%-122 - C4 -2ZL9 10.8 VDR_RAT
32 PsiBlast_CBE 88.4665%-123 - C4 -1RK3 10.9 VDR_RAT
37 PsiBlast_CBE 88.4565%-119 - C4 -3VJT 8.5 VDR_RAT
38 PsiBlast_CBE 88.1165%-117 - C4 -3VJS 8.4 VDR_RAT
33 PsiBlast_CBE 87.7165%-116 - C4 -1RJK 11.4 VDR_RAT
30 PsiBlast_CBE 87.6765%-116 - C4 -2O4R 10.9 VDR_RAT
40 PsiBlast_CBE 87.5565%-120 - C4 -2ZLA 10.3 VDR_RAT
31 PsiBlast_CBE 87.5065%-118 - C4 -2O4J 11.2 VDR_RAT
34 PsiBlast_CBE 87.4465%-124 - C4 -3VRW 11.1 VDR_RAT
42 PsiBlast_CBE 87.3465%-117 - C4 -3A2H 10.3 VDR_RAT
35 PsiBlast_CBE 87.1665%-124 - C4 -3VRV 10.7 VDR_RAT
36 PsiBlast_CBE 87.0765%-120 - C4 -3VRU 9.7 VDR_RAT
20 PsiBlast_PDB 86.9465%-110 - C4 -3A40 11.6 VDR_HUMAN
5 PsiBlast_PDB 86.8165%-113 - C4 -3KPZ 10.7 VDR_HUMAN
18 PsiBlast_PDB 86.7565%-109 - C4 -3CS6 11.2 VDR_HUMAN
70 PsiBlast_CBE 86.7265%-109 - C4 -3A2J 10.1 VDR_HUMAN
7 PsiBlast_PDB 86.7165%-114 - C4 -4G2I 11.3 VDR_HUMAN
19 PsiBlast_PDB 86.6865%-110 - C4 -3A3Z 11.4 VDR_HUMAN
16 PsiBlast_PDB 86.6665%-110 - C4 -2HB8 11.1 VDR_HUMAN
24 PsiBlast_CBE 86.6365%-111 - C4 -3WWR 11.4 VDR_HUMAN
9 PsiBlast_PDB 86.6265%-112 - C4 -1S0Z 11.2 VDR_HUMAN
6 PsiBlast_PDB 86.6165%-108 - C4 -3TKC 10.9 ?
4 PsiBlast_PDB 86.6065%-108 - C4 -3OGT 10.9 VDR_HUMAN
63 PsiBlast_CBE 86.5365%-115 - C4 -3WGP 11.7 VDR_HUMAN
65 PsiBlast_CBE 86.4965%-117 - C4 -3W0C 12.4 VDR_HUMAN
23 PsiBlast_CBE 86.4765%-113 - C4 -4ITE 12.4 VDR_HUMAN
3 PsiBlast_PDB 86.3965%-110 - C4 -1IE9 11.0 VDR_HUMAN
64 PsiBlast_CBE 86.3765%-115 - C4 -3W0Y 12.9 VDR_HUMAN
26 PsiBlast_CBE 86.3665%-110 - C4 -3AX8 10.8 VDR_HUMAN
21 PsiBlast_CBE 86.3665%-110 - C4 -4PA2 11.4 VDR_HUMAN
13 PsiBlast_PDB 86.3665%-112 - C4 -2HAR 12.0 VDR_HUMAN
22 PsiBlast_CBE 86.3465%-110 - C4 -4ITF 12.9 VDR_HUMAN
15 PsiBlast_PDB 86.3365%-110 - C4 -2HB7 11.9 VDR_HUMAN
69 PsiBlast_CBE 86.3165%-116 - C4 -3AZ1 9.2 VDR_HUMAN
25 PsiBlast_CBE 86.2965%-107 - C4 -3VHW 12.4 VDR_HUMAN
62 PsiBlast_CBE 86.1765%-112 - C4 -3B0T 10.7 VDR_HUMAN
11 PsiBlast_PDB 86.1765%-114 - C4 -1TXI 10.4 VDR_HUMAN
14 PsiBlast_PDB 86.1665%-110 - C4 -2HAS 11.8 VDR_HUMAN
12 PsiBlast_PDB 86.1365%-110 - C4 -2HAM 11.7 VDR_HUMAN
66 PsiBlast_CBE 86.1165%-117 - C4 -3W0A 12.0 VDR_HUMAN
27 PsiBlast_CBE 86.0865%-113 - C4 -3AUR 10.5 VDR_HUMAN
17 PsiBlast_PDB 86.0865%-109 - C4 -3CS4 11.2 VDR_HUMAN
1 PsiBlast_PDB 86.0765%-117 - C4 -1DB1 10.6 VDR_HUMAN
8 PsiBlast_PDB 86.0665%-108 - C4 -3P8X 9.3 VDR_HUMAN
10 PsiBlast_PDB 86.0365%-114 - C4 -1S19 10.6 VDR_HUMAN
68 PsiBlast_CBE 85.9765%-116 - C4 -3AZ2 9.7 VDR_HUMAN
28 PsiBlast_CBE 85.9265%-109 - C4 -3AUQ 10.6 VDR_HUMAN
2 PsiBlast_PDB 85.8465%-114 - C4 -1IE8 10.9 VDR_HUMAN
39 PsiBlast_CBE 85.8265%-109 - C4 -3A2I 10.4 VDR_HUMAN
29 PsiBlast_CBE 85.7265%-109 - C4 -3A78 10.6 VDR_HUMAN
71 PsiBlast_CBE 85.5565%-111 - C4 -3M7R 9.0 VDR_HUMAN
67 PsiBlast_CBE 85.4865%-114 - C4 -3AZ3 10.8 VDR_HUMAN
84 HHSearch 81.7182%-127 - C4 -2O4J 10.4 VDR_RAT
85 HHSearch 80.0482%-132 - C4 -3B0T 10.0 VDR_HUMAN