@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : ANM3_MOUSE: (2014-04-04 )
MCSLAAGNGRGAELGPEPLELSDSGDDAGWEDEDADTEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVEYMNSIYNPVPWEKDEYLKPVLEDDLLLQFDVEDLYEPVSTPFSYPNGLSESASVVEKLKHMEARALSAEAALARAREDLQKMKQFAQDFVMNVDVRTCSSTTTIADLQEDEDGVYFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKVGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWDDVYGFNMSCMKKAVIPEAVVEVVDHKTLISDPCDIKMDGKHIDCHTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLNSSTQTYSLQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_A_6(1OR8)
ANM1_RAT
[Raw transfer]




SAH_C_3(1ORH)
ANM1_RAT
[Raw transfer]




SAH_A_2(3Q7E)
ANM1_RAT
[Raw transfer]




SAH_A_2(1ORI)
ANM1_RAT
[Raw transfer]




0XU_A_4(4GQB)
ANM5_HUMAN
[Raw transfer]




SAH_A_2(4HC4)
ANM6_HUMAN
[Raw transfer]




SAH_A_2(2FYT)
ANM3_HUMAN
[Raw transfer]




SAH_B_2(1F3L)
ANM3_RAT
[Raw transfer]




BEN_A_5(3B3J)
CARM1_RAT
[Raw transfer]




BEN_A_5(3B3J)
CARM1_RAT
[Raw transfer]




CHAIN_D_4(1OR8)
ANM1_RAT
[Raw transfer]

-

BEN_A_3(3B3J)
CARM1_RAT
[Raw transfer]




CHAIN_B_2(1OR8)
ANM1_RAT
[Raw transfer]

-

CHAIN_C_3(1OR8)
ANM1_RAT
[Raw transfer]

-

CHAIN_C_3(4GQB)
ANM5_HUMAN
[Raw transfer]

-

BEN_A_3(3B3J)
CARM1_RAT
[Raw transfer]




1 PsiBlast_PDB 95.1098%-124 - C2 -1F3L 8.1 ANM3_RAT
3 PsiBlast_PDB 93.1791%-139 - C2 -3SMQ 6.2 ANM3_HUMAN
98 HHSearch 92.3991%-131 - C2 -2FYT 8.0 ANM3_HUMAN
4 PsiBlast_PDB 92.1891%-137 - C2 -4HSG 5.4 ANM3_HUMAN
2 PsiBlast_PDB 92.0391%-131 - C2 -2FYT 8.0 ANM3_HUMAN
100 HHSearch 81.6150%-127 - C2 -3Q7E 5.6 ANM1_RAT
6 PsiBlast_PDB 79.2149%-130 - C2 -1ORI 5.9 ANM1_RAT
5 PsiBlast_PDB 79.0849%-128 - C2 -1OR8 6.5 ANM1_RAT
88 Fugue 78.9349%-127 - C2 -3Q7E - ANM1_RAT -
7 PsiBlast_PDB 78.6649%-126 - C2 -1ORH 6.1 ANM1_RAT
8 PsiBlast_PDB 78.4049%-128 - C2 -3Q7E - ANM1_RAT -
104 HHSearch 75.7337%-123 - C2 -4IKP 8.0 CARM1_HUMAN
26 PsiBlast_CBE 72.6837%-119 - C2 -2V74 - CARM1_MOUSE -
101 HHSearch 72.6336%-119 - C2 -4HC4 - ANM6_HUMAN -
30 PsiBlast_CBE 72.1437%-119 - C2 -3B3F - CARM1_RAT -
34 PsiBlast_CBE 72.0637%-119 - C2 -4IKP - CARM1_HUMAN -
15 PsiBlast_PDB 71.6637%-119 - C2 -3B3F - CARM1_RAT -
28 PsiBlast_CBE 71.6237%-117 - C2 -2V74 - CARM1_MOUSE -
13 PsiBlast_PDB 71.3537%-118 - C2 -2V74 - CARM1_MOUSE -
17 PsiBlast_PDB 71.3437%-117 - C2 -4IKP - CARM1_HUMAN -


User Run : PsiBlast Ligand Search Result:

(10 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_A_6(1OR8)
ANM1_RAT
[Raw transfer]




SAH_C_3(1ORH)
ANM1_RAT
[Raw transfer]




SAH_A_2(3Q7E)
ANM1_RAT
[Raw transfer]




SAH_A_2(1ORI)
ANM1_RAT
[Raw transfer]




0XU_A_4(4GQB)
ANM5_HUMAN
[Raw transfer]




SAH_A_2(4HC4)
ANM6_HUMAN
[Raw transfer]




SAH_A_2(2FYT)
ANM3_HUMAN
[Raw transfer]




SAH_B_2(1F3L)
ANM3_RAT
[Raw transfer]




BEN_A_5(3B3J)
CARM1_RAT
[Raw transfer]




BEN_A_5(3B3J)
CARM1_RAT
[Raw transfer]




CHAIN_D_4(1OR8)
ANM1_RAT
[Raw transfer]

-

BEN_A_3(3B3J)
CARM1_RAT
[Raw transfer]




CHAIN_B_2(1OR8)
ANM1_RAT
[Raw transfer]

-

CHAIN_C_3(1OR8)
ANM1_RAT
[Raw transfer]

-

CHAIN_C_3(4GQB)
ANM5_HUMAN
[Raw transfer]

-

BEN_A_3(3B3J)
CARM1_RAT
[Raw transfer]




121 83.5691%-137 - C- -4QQN - ? -
122 56.5936%-114 - C- -4C05 - ANM6_MOUSE -
124 56.4535%-109 - C- -4QPP - ANM6_HUMAN -
123 56.1435%-112 - C- -4QQK - ANM6_HUMAN -
125 17.4434% -81 - C- -3AY0 - TRM5B_METJA -
129 13.3831% -40 - C- -3GRU - RSMA_METJA -
128 13.2931% -37 - C- -3GRV - RSMA_METJA -
130 13.0231% -40 - C- -3GRR - RSMA_METJA -
134 5.2636% -18 - C- -1I1N - PIMT_HUMAN -
133 5.1936% -17 - C- -1KR5 - PIMT_HUMAN -