@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0005: (2015-11-27 )
MTNVSERIYDSKNSLKFLDDEIYQSIERELQRQRSQLQLIASENFASKAVMEAQGSFLTNKYAEGYIGKRYYCGCEYVDEVENLAIERLCKLFNVRFANVQPHSGSQANQAVFASLLTPGDTILGLSISCGGHLTHGAAPNLSGKWFKSIQYAIDRGTCLLDMDEVERLALEHKPKLIIAGASAYPRRMDFKRFREIADKVSAYLLADIAHYAGLIAAGEYPSPAKYAHIITSTTHKTLRGPRGGVVITNDEALHKKVQSAVFPGLQGGPLMHVIAAKAVAFKEALAPEFKAYIKRVVENAKVLAQALQKHGLSVITGGTDSHIVLVDLRPQKLTGKGAVDSLERAGITCNKNSVPFDMEKPTITSGLRFGTAAETTRGLKAENFKEIADLINEVIQGLINGNNSDVERIVKNKVKKICDDFPIY

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]




ALO_A_3(2W7G)
?
[Raw transfer]




GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]




GLY_A_2(2W7H)
?
[Raw transfer]




GLY_A_2(2VMO)
?
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2VGV)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




ALO_A_3(2VMX)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




PLP_A_3(2VGU)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_A_3(2VIA)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_A_3(2VGT)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_2(2VGS)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




PLP_A_3(2VGW)
?
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




1 PsiBlast_PDB 94.4661% -90 - C1 -4J5U - GLYA_RICRS -
22 PsiBlast_CBE 92.0660%-100 - C1 -3ECD - GLYA2_BURP1 -
36 PsiBlast_CBE 91.5956% -94 - C1 -2W7D 4.5 ?
5 PsiBlast_PDB 91.5356% -92 - C1 -1KKP 4.5 ?
6 PsiBlast_PDB 91.5156% -93 - C1 -1KL1 4.5 ?
116 HHSearch 91.4060% -99 - C1 -3ECD - GLYA2_BURP1 -
42 PsiBlast_CBE 91.4056% -94 - C1 -2VMN 4.5 ?
34 PsiBlast_CBE 91.3456% -93 - C1 -2W7F 3.3 ?
20 PsiBlast_PDB 91.3356% -94 - C1 -2VGT 3.9 ?
32 PsiBlast_CBE 91.3156% -94 - C1 -2W7H 2.9 ?
12 PsiBlast_PDB 91.3056% -95 - C1 -2VMZ 3.1 ?
4 PsiBlast_PDB 91.1456% -93 - C1 -1KKJ 3.2 ?
35 PsiBlast_CBE 91.1256% -92 - C1 -2W7E 4.3 ?
43 PsiBlast_CBE 91.1056% -93 - C1 -2W7M 4.2 ?
40 PsiBlast_CBE 91.0656% -94 - C1 -2VMP 4.3 ?
7 PsiBlast_PDB 91.0456% -93 - C1 -1KL2 5.4 ?
49 PsiBlast_CBE 91.0056% -93 - C1 -2VMT 4.6 ?
41 PsiBlast_CBE 90.9156% -92 - C1 -2VMO 3.7 ?
14 PsiBlast_PDB 90.9156% -96 - C1 -2VI8 4.4 ?
8 PsiBlast_PDB 90.9056% -96 - C1 -2VMV 4.3 ?
31 PsiBlast_CBE 90.8556% -94 - C1 -2VGU 4.3 ?
13 PsiBlast_PDB 90.8456% -93 - C1 -1YJS 4.4 ?
11 PsiBlast_PDB 90.8456% -93 - C1 -2VMW 4.4 ?
9 PsiBlast_PDB 90.7956% -94 - C1 -2VMX 4.1 ?
51 PsiBlast_CBE 90.7756% -95 - C1 -2VMR 4.4 ?
46 PsiBlast_CBE 90.7556% -92 - C1 -2W7J 4.3 ?
38 PsiBlast_CBE 90.6556% -95 - C1 -1YJY 4.2 ?
10 PsiBlast_PDB 90.6556% -93 - C1 -2VMY 4.1 ?
33 PsiBlast_CBE 90.6256% -93 - C1 -2W7G 3.4 ?
39 PsiBlast_CBE 90.5956% -93 - C1 -2VMQ 4.3 ?
37 PsiBlast_CBE 90.5756% -95 - C1 -1YJZ 3.8 ?
50 PsiBlast_CBE 90.5556% -92 - C1 -2VMS 3.1 ?
68 PsiBlast_CBE 90.4353% -91 - C1 -4WXF 5.8 GLYA_STRT1
19 PsiBlast_PDB 90.3456% -94 - C1 -2VGS 4.3 ?
16 PsiBlast_PDB 90.3456% -94 - C1 -2VIA 4.0 ?
48 PsiBlast_CBE 90.3056% -92 - C1 -2VMU 4.1 ?
65 PsiBlast_CBE 90.2153% -90 - C1 -4WXG 6.5 GLYA_STRT1
47 PsiBlast_CBE 90.1956% -92 - C1 -2W7I 3.0 ?
15 PsiBlast_PDB 90.1756% -94 - C1 -2VIB 3.8 ?
29 PsiBlast_CBE 90.1456% -93 - C1 -2VGW 4.1 ?
17 PsiBlast_PDB 89.9556% -93 - C1 -2VI9 3.9 ?
24 PsiBlast_CBE 89.9456% -91 - C1 -1KL2 4.8 ?
30 PsiBlast_CBE 89.8656% -94 - C1 -2VGV 4.3 ?
25 PsiBlast_CBE 89.8356% -90 - C1 -2VMY 4.3 ?
66 PsiBlast_CBE 89.5753% -87 - C1 -4WXG 6.1 GLYA_STRT1
44 PsiBlast_CBE 89.3156% -92 - C1 -2W7L 4.4 ?
45 PsiBlast_CBE 89.3056% -92 - C1 -2W7K 4.1 ?
67 PsiBlast_CBE 89.2853% -88 - C1 -4WXF 5.4 GLYA_STRT1
113 HHSearch 88.6756% -91 - C1 -2DKJ 3.2 GLYA_THET8
115 HHSearch 88.6556% -93 * C1 *2VI8 4.4 ?
23 PsiBlast_CBE 86.4558% -88 - C1 -2DKJ 3.1 GLYA_THET8
77 PsiBlast_CBE 86.2854% -84 - C1 -3G8M 4.3 GLYA_ECOLI
109 HHSearch 85.5645% -85 - C1 -1RV3 2.8 GLYC_RABIT
102 Fugue 85.0044% -87 - C1 -1BJ4 2.7 GLYC_HUMAN
83 PsiBlast_CBE 83.1944% -81 - C1 -4PVF 3.0 GLYM_HUMAN
82 PsiBlast_CBE 82.4444% -86 - C1 -4PVF 3.3 GLYM_HUMAN