@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0012: (2015-11-27 )
MNYYKTHTCNELRKNDVEKEVTLSGWMYRKRDHGNLIFVDLRDFYGITQLVFNNDKDFFCKISDLKPESVITVTGIVKARTEDTINISISTGEIEVTVNNLQIESEVEFHHNEETAKEERSILASIADDQEYPENMRFKYRFLDLRREKVRNNIVLRSQIIAELRKFMIEQGFLEIQTPILTASSPEGARDYLVPSRLNPGKFYALPQAPQIFKQLLMISGFDKYFQIAPCFRDEDARADRSPGEFYQLDLEMSFVTQEDVFQVIESTLYKVFAKFSRKSVDKGFSRITYKEAMLKYGSDKPDLRNPLLISDVTEIFRDSEFNIFKSNIERGMVVRAIPAPKTAEEPRSFFDKKIEHTQKEFGAKGLGYITFNKDGTAKGPIAKFLDDNRLNHIREATNIKPGDSVFFASDKENEAATIAGKVRTLLGSELGLIDNNIFKFCWVVDFPYFVYDDKSKKIDFFHNPFSMPHGGLKDLEEKNPLDILAYQYDLVCNGIELSSGAIRNNKLDIMYKAFATAGYNKEEVNKKFGALVRAFRFGVPPHGGIAPGIDRIVMLLADAPNIREITCFPMNQQGEDVLMDAPSKVDNKHLRELSLKVVE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMO_E_5(1G51)
SYD_THETH
[Raw transfer]




AMO_F_6(1G51)
SYD_THETH
[Raw transfer]




AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




ASP_A_3(4O2D)
SYDND_MYCS2
[Raw transfer]




ASP_B_6(4O2D)
SYDND_MYCS2
[Raw transfer]




FMT_A_3(4RMF)
SYDND_MYCS2
[Raw transfer]




ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]




7 PsiBlast_PDB 93.3240% -83 - C4 -4WJ4 3.7 SYDND_PSEAE
6 PsiBlast_PDB 92.9640% -84 - C4 -4WJ3 - SYDND_PSEAE -
26 HHSearch 92.6842% -81 - C4 -1L0W - SYD_THETH -
24 PsiBlast_CBE 92.1641% -83 - C4 -1EQR - SYD_ECOLI -
46 Fugue 91.9641% -79 - C4 -1C0A 7.9 SYD_ECOLI
5 PsiBlast_PDB 91.9441% -80 - C4 -1IL2 - SYD_ECOLI -
22 PsiBlast_CBE 91.9341% -79 - C4 -1IL2 - SYD_ECOLI -
2 PsiBlast_PDB 91.8341% -80 - C4 -4RMF 4.0 SYDND_MYCS2
1 PsiBlast_PDB 91.6641% -78 - C4 -4O2D 3.4 SYDND_MYCS2
3 PsiBlast_PDB 91.3841% -78 - C4 -1C0A 7.9 SYD_ECOLI
4 PsiBlast_PDB 90.9141% -83 - C4 -1EQR - SYD_ECOLI -
10 PsiBlast_PDB 90.6040% -74 - C4 -1L0W - SYD_THETH -
23 PsiBlast_CBE 90.5341% -82 - C4 -1EQR - SYD_ECOLI -
25 PsiBlast_CBE 90.1840% -71 - C4 -1G51 7.5 SYD_THETH
9 PsiBlast_PDB 90.1640% -71 - C4 -1G51 7.5 SYD_THETH
8 PsiBlast_PDB 89.8040% -74 - C4 -1EFW - SYD_THETH -
21 PsiBlast_CBE 86.9141% -74 - C4 -4O2D 3.6 SYDND_MYCS2
11 PsiBlast_PDB 81.6733% -80 - C4 -4AH6 - SYDM_HUMAN -
29 HHSearch 67.7828% -80 - C4 -3NEM - SYD_THEKO -
27 HHSearch 66.3628% -73 - C4 -1WYD - SYDND_SULTO -