@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0019: (2015-11-27 )
MFEIIKKSIEWGGRTLSLETGKIARQADGSVVVNYGDTSILVTVVRKKKEEIVDFLPLNVQFIAKSYAMGRIPGGFFKREGKPSDRETLISRVIDRSIRPLFLEGFHDEISIVCNLLTYDTVNPPEVPALIGAVAALAISGVPFHFIIAGVLVGCDGNNNYILNPSVQEMKVSSLDLFLSGDERSILMVESEAKELPEENILNAIKFGHEHLQPVIKLIKEFADTIGNKFDSFAPIDISDIMQDLEKHSKDFEEAYSQTVKQERAQTLETIRNNILNPLKEAGKDEKLITQAVKNFERSLLRKIIREKGTRIDGRKYDEIRQIEVEVDILSRTHGSALFTRGSTQALVVTALGTTQDEQIVDDIEGDRREHFMLHYNFPSFAVGDASAIRAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVSEIMESDGSSSMATVCGTSLALMDTGVPIKSPVAGIAMGLIKDKNDYVILSDILGDEDYLGDMDFKVAGTSEGITALQMDMKISGISFEIVEKSLEQAKAGRLHILEKMNSVISEHSDDVKGHAPRMVSFYIDKDKISAAIGAKGKNIRSVCERSNAKIEIGDDGKVSVFAMSSAEAEIAKNMMIDSITELEQGAIVDVKVVKIDKSIVELELFNGRKGKMHISEVANQHIESIESILKQGDTFKALVIDFEKGGCPKLSRRRVDQETGDFFEGELYNEEKKDSSNDRDYYNSPFNRKSGHRKRPVHSRSSFSNRNNRPKFGNDDSSSSFY

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_H_8(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_D_2(3GCM)
PNP_ECOLI
[Raw transfer]

-

CHAIN_F_6(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_N_14(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_F_6(3GCM)
PNP_ECOLI
[Raw transfer]

-

CHAIN_S_18(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_J_10(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_E_4(3GCM)
PNP_ECOLI
[Raw transfer]

-

CHAIN_D_2(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_E_4(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_P_16(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_U_20(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_L_12(3H1C)
PNP_ECOLI
[Raw transfer]

-

CHAIN_W_22(3H1C)
PNP_ECOLI
[Raw transfer]

-

2 PsiBlast_PDB 92.6247% -94 - C4 -4AIM - PNP_CAUCR -
22 PsiBlast_CBE 89.8047% -97 - C4 -4AM3 - PNP_CAUCR -
1 PsiBlast_PDB 89.6247% -93 - C4 -4AM3 - PNP_CAUCR -
21 PsiBlast_CBE 88.4147% -93 - C4 -4AM3 - PNP_CAUCR -
3 PsiBlast_PDB 87.7647% -94 - C4 -4AID - PNP_CAUCR -
140 HHSearch 84.8739% -96 - C4 -3U1K - PNPT1_HUMAN -
25 PsiBlast_CBE 84.1144% -89 - C4 -4NBQ - PNP_COXBU -
24 PsiBlast_CBE 84.0147% -94 - C4 -4AID - PNP_CAUCR -
128 Fugue 83.9838% -90 - C4 -3U1K - PNPT1_HUMAN -
37 PsiBlast_CBE 83.2147% -90 - C4 -3GCM 5.7 PNP_ECOLI
40 PsiBlast_CBE 83.2038% -93 - C4 -3U1K - PNPT1_HUMAN -
9 PsiBlast_PDB 83.1238% -94 - C4 -3U1K - PNPT1_HUMAN -
23 PsiBlast_CBE 82.7947% -94 - C4 -4AID - PNP_CAUCR -
29 PsiBlast_CBE 82.7647% -88 - C4 -3H1C 5.5 PNP_ECOLI
41 PsiBlast_CBE 82.7038% -90 - C4 -3U1K - PNPT1_HUMAN -
38 PsiBlast_CBE 82.4647% -91 - C4 -3GCM 5.2 PNP_ECOLI
6 PsiBlast_PDB 82.4347% -89 - C4 -3GCM 5.3 PNP_ECOLI
30 PsiBlast_CBE 82.0947% -90 - C4 -3H1C 5.5 PNP_ECOLI
138 HHSearch 82.0543%-106 - C4 -3CDI - PNP_ECOLI -
26 PsiBlast_CBE 82.0247% -89 - C4 -3H1C - PNP_ECOLI -
5 PsiBlast_PDB 82.0247% -89 - C4 -3H1C 6.0 PNP_ECOLI
36 PsiBlast_CBE 81.8147% -91 - C4 -3H1C 5.0 PNP_ECOLI
27 PsiBlast_CBE 81.7547% -90 - C4 -3H1C 3.8 PNP_ECOLI
33 PsiBlast_CBE 81.7247% -87 - C4 -3H1C 4.4 PNP_ECOLI
32 PsiBlast_CBE 81.5547% -91 - C4 -3H1C 4.0 PNP_ECOLI
35 PsiBlast_CBE 81.3847% -92 - C4 -3H1C 5.6 PNP_ECOLI
34 PsiBlast_CBE 81.3147% -89 - C4 -3H1C 5.3 PNP_ECOLI
28 PsiBlast_CBE 81.2947% -91 - C4 -3H1C 4.3 PNP_ECOLI
31 PsiBlast_CBE 80.8247% -90 - C4 -3H1C 4.7 PNP_ECOLI