@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0021: (2015-11-27 )
MANEHLNLFSLENSDYIYADYNATFPVSDSVKESILEVLSKQVLNPSSLHRKGQEARRILQDARDNIRSAIGVPSNKEIVFTSGATEANSLVMKGIAGFQHVISAVEHPSILNSACNPHIIPVNQGGIVDLLALERILSELKGNRVIVSVMMANNETGVVQPVKEIAEIAHKFETIYHTDAAQSVGKIKVNMEDLGMDLLTLSAHKFGGIAGSGVLIFNKDLVIEPIIVGGGQEKGLRGGTENIVAIAGLSAALQSISNLLSKMDEIKELRDQLEYELLNLASGIKIFGKNSKRLPNTSLIYMPGVKSDVQLMNFDLNNIAVSNGSACSSGKVEPSHVLLAMGATREQAECSIRVSIGPQTKPRDIRKIVDCWYNIYEKNILDMRK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_C_3(1ECX)
?
[Raw transfer]




PLP_A_3(3VAX)
?
[Raw transfer]




PLP_A_3(3VAX)
?
[Raw transfer]




PMP_A_5(4HVK)
ISCS2_ARCFU
[Raw transfer]




PLP_A_6(1EG5)
?
[Raw transfer]




PLP_B_4(3VAX)
?
[Raw transfer]




PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]




PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]




PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]




PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]




PLP_A_4(4EB7)
ISCS2_ARCFU
[Raw transfer]




PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]




PLP_B_9(4EB5)
ISCS2_ARCFU
[Raw transfer]




PLP_B_8(4EB7)
ISCS2_ARCFU
[Raw transfer]




CYS_B_4(3A9Y)
SCLY_RAT
[Raw transfer]




1 PsiBlast_PDB 93.1742%-100 - C2 -4IXO - ? -
59 Fugue 88.9332% -93 - C2 -4ISY - ISCSL_MYCTU -
35 HHSearch 85.6435% -97 - C2 -1EG5 3.9 ?
58 Fugue 84.6434% -91 * C2 *1ECX 3.6 ?
6 PsiBlast_PDB 83.9134% -84 - C2 -3LVJ - ISCS_ECO57 -
24 PsiBlast_CBE 82.7034% -86 - C2 -3LVJ - ISCS_ECO57 -
7 PsiBlast_PDB 82.2334% -84 - C2 -3LVK - ISCS_ECO57 -
40 HHSearch 81.9433% -79 - C2 -3A9Z 4.4 SCLY_RAT
5 PsiBlast_PDB 80.2135% -98 - C2 -1ECX - ? -
23 PsiBlast_CBE 80.2035% -98 - C2 -1ECX - ? -
8 PsiBlast_PDB 79.9634% -97 - C2 -1EG5 - ? -
4 PsiBlast_PDB 79.8933% -81 - C2 -4HVK 3.6 ISCS2_ARCFU
2 PsiBlast_PDB 79.3833% -74 - C2 -4EB5 - ISCS2_ARCFU -
3 PsiBlast_PDB 78.8733% -75 - C2 -4EB7 3.1 ISCS2_ARCFU
9 PsiBlast_PDB 78.8331% -87 - C2 -4ISY - ISCSL_MYCTU -
25 PsiBlast_CBE 78.5331% -85 - C2 -4ISY - ISCSL_MYCTU -
26 PsiBlast_CBE 78.2531% -85 - C2 -4ISY - ISCSL_MYCTU -
31 PsiBlast_CBE 78.2431% -70 - C2 -3A9X 4.2 SCLY_RAT
22 PsiBlast_CBE 77.7433% -78 - C2 -4EB5 2.8 ISCS2_ARCFU
10 PsiBlast_PDB 77.5631% -78 - C2 -3GZC - SCLY_HUMAN -
21 PsiBlast_CBE 77.0433% -77 - C2 -4EB7 3.0 ISCS2_ARCFU
13 PsiBlast_PDB 76.9031% -69 - C2 -3A9Z 4.4 SCLY_RAT
30 PsiBlast_CBE 76.5031% -71 - C2 -3A9Y 4.5 SCLY_RAT
32 PsiBlast_CBE 76.2632% -85 - C2 -3VAX 2.9 ?
14 PsiBlast_PDB 75.6132% -85 - C2 -3VAX 3.7 ?
12 PsiBlast_PDB 74.9531% -70 - C2 -3A9X 4.5 SCLY_RAT
37 HHSearch 71.3831% -76 - C2 -3VAX 3.7 ?