@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0032: (2015-11-27 )
MMNTDETIFALSTVFGKSGVAVIRISGNHALKALNHFHVNKDMKPRFATLVDLYDSSDQLIDNGIAIYFPAPNSFTGEDVIELQVHGGKAVIKIVLEELSRIFVMAKPGEFLLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQMSGELEKLYSSWRQRLIAVQSKIEAYIDFPEDVATEKNELEKINDEVQTLVQSIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLARRDIAIVSEYVGTTRDILEAHIDIGGYPIILSDTAGIRESSDPVESEGISRAKKRSCEADLRIELFPFEQRYNINCNVISSNTIYVLSKADDVINDHDIKISDIDFLPVSILKGIGTEKLVSVIKEKVEEKFVYDRDVPVITRQRHRNCMQKAIEHLRRFNMNNPIELVSEDLRLAASELGVVTGIINVEEVLDDIFNNFCVGK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GCP_B_6(3GEI)
MNME_CHLTE
[Raw transfer]




GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]




GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]




GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]




GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]




2 PsiBlast_PDB 91.1635% -90 - C1 -1XZP - MNME_THEMA -
3 PsiBlast_PDB 90.3235% -93 - C1 -1XZQ - ? -
87 HHSearch 89.1133% -83 - C1 -1XZP - MNME_THEMA -
5 PsiBlast_PDB 86.9231%-103 - C1 -3GEI 6.9 MNME_CHLTE
75 Fugue 86.2332% -79 - C1 -1XZP - MNME_THEMA -
21 PsiBlast_CBE 86.0731%-100 - C1 -3GEI 6.3 MNME_CHLTE
86 HHSearch 85.9533% -86 - C1 -3GEH - MNME_NOSS1 -
1 PsiBlast_PDB 84.2332% -90 - C1 -3GEH - MNME_NOSS1 -
85 HHSearch 83.2732% -92 - C1 -3GEE 6.3 MNME_CHLTE
4 PsiBlast_PDB 82.7231% -96 - C1 -3GEE 6.3 MNME_CHLTE
89 HHSearch 57.0129% -75 - C1 -3IEV - ERA_AQUAE -
99 HHSearch 56.3835% -71 - C1 -2GJ8 8.2 MNME_ECOLI
90 HHSearch 52.3427% -87 - C1 -1MKY - DER_THEMA -
98 HHSearch 51.7328% -79 - C1 -1MKY - DER_THEMA -
82 Fugue 51.6617% -30 - C1 -1MKY - DER_THEMA -
14 PsiBlast_PDB 51.4124% -63 - C1 -3IEU - ERA_ECOLI -
100 HHSearch 51.3825% -63 - C1 -3A1S - ? -
105 HHSearch 51.0926% -68 - C1 -2DYK - ? -
12 PsiBlast_PDB 51.0724% -66 - C1 -1EGA - ERA_ECOLI -
30 PsiBlast_CBE 50.9835%-108 - C1 -1XZQ - ? -